barSeed - Barley Seed Development Database

Probe CUST_22255_PI390587928

Source Contig U35_32516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22255_PI390587928	Hv_44K_v2	ATCTTCACTGAAAAGTGAAAAACAGTGTGCTGGTGCCATTGGTTGGAGCAGTGAAAGCGA	49	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54031.1	2939	2e-24	2815 - 2874	100	60 / 60	minus	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
JLOC1	JLOC1_34760.1	2978	8e-25	78 - 137	100	60 / 60	plus
Harvest21	ABC01736	2843	3e-25	14 - 73	100	60 / 60	plus	ABC01736
Harvest35	U35_32516	456	3e-25	50 - 109	100	60 / 60	plus
Harvest35	U35_14196	481	3e-25	49 - 108	100	60 / 60	plus
Harvest35	U35_14194	2886	3e-25	44 - 103	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_32516 456 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCTCACACACACTCACGCAACACACATCCATCTTCACTGA
AAAGTGAAAAACAGTGTGCTGGTGCCATTGGTTGGAGCAGTGAAAGCGAGGAGAGGAGGC
CAAGAACAAGATGCTGCTGGGAGGGCTGATCGACACCCTCACGGGGGCGAACAAGAGCGC
CCGGCTCAAGGGCACGGTGGTGCTCATGCGCAAGAACGTGCTGGACCTCAACGACTTCGG
CGCCACCATCATCGACGGCATCGGCGAGTTCCTCGGCAGGGGCGTCACCTGCCAGCTTAT
CAGTTCCACCGCCGTCGACCAAGACAACGGCGGTCGCGGGGAGGTGGGCGCGGAGGCGGA
GCTGGAGCAGTGGGTGACGAGCCTGCCGTCGCTGACGACGGGGGAGTCCAAGTTCGGCCT
CACCTTCGACTGGGAGGTGGAGAAGCTCGGGGTGCC

Homology of Contig U35_32516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None