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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_22100_PI390587928Hv_44K_v2GCGTTTTGAACATGGATCCCATAACCCCATTACAGCATCCATTTCAGGCATAAACTTAAA693GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4051.1941.2170.8850.3400.531
Raw 577.622760.848687.137778.372107.348181.822



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_75942.113653e-22884 - 9429858 / 59plus ABC00043 ABC00067 ABC00650 ABC52628
Harvest21ABC006508633e-25790 - 84910060 / 60plusABC00650
Harvest35U35_147667673e-25694 - 75310060 / 60plus



Contig Sequence (767 bp)

>U35_14766 767 Hv_44K_v2
GGCGCGGGCGGCGGATTAGGGTTTCATTTGCGTCCGTTCTCAACGTCAGCAGGAGCGAGC
GGGAACTCCGGCCATGGCGCCGTCGCAGCCCAAGTCAGGGCTCTTCGTGGGCATCAACAA
GGGCCACGTCATCACCAAGCGCGAGCTGCCGCCCCGCCCGTCCGACCGCAAGGGGAAAGG
CACAAAGAGGGTGCATTTTGTCAGGAACTTGATCAGGGAGGTTGCTGGATTCGCTCCATA
TGAGAAACGCATCACTGAGCTTCTTAAGGTTGGAAAGGACAAGCGTGCACTCAAGGTCGC
CAAGAGAAAGCTTGGTACTCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGTCAAGTGT
CCTGAGGAAGATGAGGTCTGCTGGTGGTGGTGGTGCTGGTGACAAGAAGAAATAGAACTT
TGCCAGTCGTCAATTTTATCGCAAAACTCTGTCCTGTCCTGTATTACCAGTCGGTACCTA
TAGAGCTATGGCCGTTGTGGATTGTGGAACTACTAAATTTGTGACACTCTCTAAGCCTGC
GGTTTCTGTTTTGAGAAGACCAATCTTTTTAAGATTTTTACATGAGTTTGGCGCCTTTGT
TTTATTATTAAAAAAAAAAAAAAAAATTACTTGATACTCAGCTGTTTATTCAGTTATGTA
GCTTGTCTGGGTTTTGTACCTGTGATTGTTGCTGCGTTTTGAACATGGATCCCATAACCC
CATTACAGCATCCATTTCAGGCATAAACTTAAAAAAAAAAAAAAAAA



Homology of Contig U35_14766 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g38520.41143e-63protein|60S ribosomal protein L36-2, putative, expressed
Brachypodium v1_2Bradi2g23260.31122e-64
Arabidopsis v10AT3G53740.21122e-51Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112