barSeed - Barley Seed Development Database

Probe CUST_22053_PI390587928

Source Contig U35_14780

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22053_PI390587928	Hv_44K_v2	TGAATCATGCATCATCCATGATGTATCGGATCGGACCGAGCAAGGCTATGTATAAATGTT	1362	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.786	1.628	2.172	1.902	0.695	0.816
Raw	627.134	2194.943	2448.130	3488.008	421.845	548.554

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367371	1584	2e-24	1498 - 1557	100	60 / 60	plus	ABC02873 ABC02876 ABC08009
MLOC	MLOC_52820.2	1611	2e-24	1549 - 1608	100	60 / 60	plus	ABC02873 ABC02876 ABC08009
JLOC1	JLOC1_33866.1	1676	8e-25	1557 - 1616	100	60 / 60	plus
Harvest21	ABC02876	1457	3e-25	1367 - 1426	100	60 / 60	plus	ABC02876
Harvest35	U35_14780	1487	3e-25	1363 - 1422	100	60 / 60	plus

Contig Sequence (1487 bp)

>U35_14780 1487 Hv_44K_v2
GCACCACCCCTCCTCCTCCTCGCACCCAGCCAAACCCAGCCAACTGACCGCACGCTACAA
GCCGAGAGTCAGCCGGTAGTGACACTAGCGAGCGAGTGAGTGGGTGAGGAGAATGGGGAG
GCCGCAGCTCACGCTCCTGTCGGCGCCGGCGCCGGCGCTGGTGCTCGCCGTGCTGCTGCT
CTCCTCCTCCTACTCCCTCCACAGTGCCGAGGCGGCGGAGGAGGAGGCGAGTGCCGGCCT
GGACACGGGCGTGGCCGGCGACCCCGGCCTGCTCAACGCCACCGCCGTGTCCATCGGGCA
GTCGGGCGTCGCCCGGGCCACCTGGTACGGCGCGCCCAACGGCGCCGGCCCCTACGACAA
CGGCGGCGCTTGCGGGTTCAAGAACGTGAACCGGTACCCGTTCATGGCCATGACCTCCTG
CGGCAACCAGCCGCTGTTCAAGGACGGCAAGGGCTGCGGCGCATGCTACAAGATCAAGTG
CACGAAGCACAAGGCGTGCTCCGGGCGGCAGGAGACGGTGATGATCACGGACATGAACTA
CTACCCGGTGGCGCCCTACCACTTCGACCTCAGCGGCACCGCCTTCGGCAAGCTCGCCAA
GCCCGGCCGCAACGACGAGCTCCGACACGCCGGCATCATCGACATCCAGTTCACCAGGGT
GGCGTGCGAGTTCCCGGGGCTGAAGGTGGGGTTCCACGTGGAGGAGGGGTCCAACGCGGT
GTACATGGCGATCCTGGTGGAGTACGAGAACGGCGACGGCGACGTGGTGCAGGTCGACCT
CATGGAGTCCGGCCGCGGACGGCGCGGCGGCGGGCGGTGGACGCGGATGCGCGAGTCGTG
GGGATCCATCTGGCGCCTCGACTCCAACCATCGTCTCCAGGCGCCATTCTCCATCCGCAT
CCGCAACGAGTCCGGCAAGACGCTCGTCGCCCGCAACGTCATCCCCAAGAACTGGAGGCC
CAACACCTTCTACCGCTCCATCGTCCAGTACAGCTAGATAAGATGGCCATCGTCAGTCAT
CGTCTTCCTCCGTCGAACCAACCAACCAGCAAGAGAGCTCTGTTTTGGCGGGAGTTTTAA
TCAATCAATCAATTAATTTCTGTGGGAAATAGAGGAGGCGACCTAGCGTGTTCGTCCATG
CCCGGAGAAATAAGCCGGAGCGTGTGCACGCTAGCTCTCCCGCCCACTTTATTATTGCTA
TTAGTCGTCGTCTTCTTCGTCTTCGTCTTGGTGCTATTGATTGTTTCAGACTTTGCGGAT
GCATCTGCCGCATGCAATGCCAACCCTCTACGAATATGTAACTGCATGCTCTGTATCCAT
TCATGAAGCATGATCGCATTTATGTACTACTACTAGTATCTGTGAATCATGCATCATCCA
TGATGTATCGGATCGGACCGAGCAAGGCTATGTATAAATGTTCCCGGCTTTTAAAAAAAA
AAAAAAAAAGGCCTACTTGCTGGCTGCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40730.1	287	8e-139	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g78350.1	273	1e-164
Arabidopsis v10	AT1G65680.1	273	2e-63	\| Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 \| expansin B2 \| chr1:24427266-24428399 FORWARD LENGTH=273