- Probe CUST_22046_PI390587928
- Source Contig U35_14787
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22046_PI390587928 | Hv_44K_v2 | ATGATCACGGACATGAACTACTACCCGGTGGCGCCCTACCACTTCGACCTCAGCGGCACC | 529 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.898 | 0.916 | 1.788 | 1.416 | 0.562 | 0.614 |
| Raw | 330.324 | 539.206 | 891.409 | 1066.880 | 161.388 | 189.237 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367371 | 1584 | 2e-24 | 656 - 715 | 100 | 60 / 60 | plus | ABC02873 ABC02876 ABC08009 |
| JLOC1 | JLOC1_8688.2 | 1737 | 6e-21 | 726 - 781 | 98 | 55 / 56 | plus | |
| JLOC1 | JLOC1_8688.1 | 1587 | 6e-21 | 576 - 631 | 98 | 55 / 56 | plus | |
| Harvest21 | ABC02876 | 1457 | 3e-25 | 525 - 584 | 100 | 60 / 60 | plus | ABC02876 |
| Harvest21 | ABC02873 | 1283 | 2e-21 | 416 - 471 | 98 | 55 / 56 | plus | ABC02873 |
| Harvest35 | U35_14787 | 682 | 3e-25 | 530 - 589 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14780 | 1487 | 3e-25 | 521 - 580 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14784 | 1355 | 2e-21 | 459 - 514 | 98 | 55 / 56 | plus |
Contig Sequence (682 bp)
>U35_14787 682 Hv_44K_v2 CAGCTCAGCCCACCACCCCTCCTCCTCCTCGCACCCAGCCAAACCCAGCCAACTGACCGC ACGCTACAAGCCGAGAGTCAGCCGGTAGCGACACTAGCGAGCGAGTGAGTGGGTGAGGAG AATGGGGAGGCCGCAGCTCACACTCCTGTCGGCGCCGGCGCCGGCGCTGGTGCTCGCAGT GCTGCTGCTCTCCTCCTCCTACTCCCTCCATGGTGCCGACGCAGCGGAGGATGAGGCGAG CGCCGGCCTGGACACGGGCGTGGCCGGCGATCCCGGCCTGCTCAACGCCACCGCCGTGTC CATCGGGCAGTCGGGCGTCGCCCGGGCCACCTGGTACGGCGCGCCCAACGGCGCCGGCCC CTACGACAACGGCGGCGCTTGCGGGTTCAAGAACGTGAACCGGTACCCGTTCATGGCCAT GACCTCCTGCGGCAACCAGCCGCTGTTCAAGGACGGCAAGGGCTGCGGCGCATGCTACAA GATCAAGTGCACGAAGCACAAGGCGTGCTCCGGGCGGCAGGAGACGGTGATGATCACGGA CATGAACTACTACCCGGTGGCGCCCTACCACTTCGACCTCAGCGGCACCGCCTTCGGCAA GCTCGCCAAGCCCGGCCGCAACGACGAGCTCCGACACGCCGGCATCATCGACATCCAGTT CACCAGGGTGGCGTGCGAGTTC
Homology of Contig U35_14787 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g40730.1 | 287 | 6e-75 | protein|expansin precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g78350.1 | 273 | 3e-94 | |
| Arabidopsis v10 | None |