barSeed - Barley Seed Development Database

Probe CUST_21973_PI390587928

Source Contig U35_16442

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21973_PI390587928	Hv_44K_v2	TGTTGTAATTGTAGGCAGTAGTAGGCTTTTCTGGGTTGTAGTATATTGTAACGATTGTAA	834	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67022.2	1814	2e-24	1709 - 1768	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.1	866	2e-24	703 - 762	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.3	1117	2e-24	921 - 980	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.4	983	2e-24	787 - 846	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.5	1901	2e-24	1705 - 1764	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
JLOC1	JLOC1_44211.4	896	8e-25	669 - 728	100	60 / 60	plus
JLOC1	JLOC1_44211.3	993	8e-25	766 - 825	100	60 / 60	plus
JLOC1	JLOC1_44211.2	1127	8e-25	900 - 959	100	60 / 60	plus
JLOC1	JLOC1_44211.1	1939	8e-25	1712 - 1771	100	60 / 60	plus
Harvest21	ABC11000	974	3e-25	835 - 894	100	60 / 60	plus	ABC11000
Harvest35	U35_16442	974	3e-25	835 - 894	100	60 / 60	plus

Contig Sequence (974 bp)

>U35_16442 974 Hv_44K_v2
CCCTCGACCCGCAACCCAAACCCTAACCCTCCCGTCGGACCCCTGTCCCCTCTCCCCAAT
TGGACCGTTGCCGCCGCCGCCGCCCACCTACGGCGGCCAATCCCGCCTCCTTGCCTTCAT
CGACGACCACCCGCTCCCACCGCCCGCGGCTATACCGTCCTGTCGACCACCGGTGGCCTG
CTCGCCGGTGAGTACGTGCAGCGATCTCAAGAGAAGCGTGCTCGCAAGGGGAGGGGGAGG
TGCCGGATCTCGCGGGACAAGTGCGTCAACAACGTGTGAATCCTCAGATGGATATGCAGG
CTATGGATCGATGCCACCATATTGGGAACATTTTGTTACAACTAGAATTGTCATGCTTAG
GATTTCCCTTGCTGATTGGGAACATTTTGTGAAACTTATGTTATTCATGTAGCTTTTGCA
GTGGAAGGGCAAGTGAAAGAGAAGACTCGTTGGTGCCAACTGCTGAAAGACCTCAGTGAG
AAATTTAAGGCGTTGAAGATAGAGCACCAGATGTTACTGAAAGAATCAGTGGACTACAAA
AAGTGTTTGTAAGATGTTACATAGAGGTACTTGACGCGAGTCCCTCCAGGGCGCGAGAGG
GTCGCTCGTGGGCGTGCCGTGCCGCAGGGCTTGGACGGGAGGGCGTCCTTGGTAGCTATG
GCAATCGCCGGAACAAGACCCACACGTTGTGCATCCGCTACGGCCGCCGCAGCTTCCACA
TGCATAAGAGCACCTGCTCCTTGTGTGGCTACCCCACCGCCCGCATCTGCAAGTGTGAAG
TGCGAATCTAAGTCCGAAGCTCTGAAGCATATCAGCGAAGAGTAGCATATTATATGTTGT
AATTGTAGGCAGTAGTAGGCTTTTCTGGGTTGTAGTATATTGTAACGATTGTAATATACT
AATGTAGTCTTGTTTTGGATGAATTTCATTTGCTTTCCTGGAATTGTTTGAAATAAATGA
TTGTGTTTGTGATT

Homology of Contig U35_16442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None