barSeed - Barley Seed Development Database

Probe CUST_2177_PI390587928

Source Contig U35_26979

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2177_PI390587928	Hv_44K_v2	TACAAATTATTTTTCCAAAAAACCGGTCGTTACACACACGGAAGCGGGGATTTGCAGTGG	485	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356131	2909	2e-24	2778 - 2837	100	60 / 60	plus	ABC13024 ABC17862 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
JLOC1	JLOC1_5950.1	2135	8e-25	1563 - 1622	100	60 / 60	plus
JLOC1	JLOC1_5949.1	1094	8e-25	259 - 318	100	60 / 60	minus
Harvest21	ABC24039	611	3e-25	67 - 126	100	60 / 60	minus	ABC24039
Harvest35	U35_26979	611	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_26979 611 Hv_44K_v2
GCTTTCCTTTCTTGTTTAACAACATTGGTGGACATGATTTATATGCATGAATGTACCCGT
GAATTAATGGCATGATAGAGTTATTAAGTGAATTATACATGCATCTCACCTGCTTTAACT
TATGTGTTTTCTTGATGTTTGCGAGTACATTCAAATTACTCACTGGCTTGTCACTGGCTA
TTGTCTTGGCCAGATTACTTTTGGAGAGGAGCACGATGTCGTCAACCCCATAATCTAGGA
GTCGAGGATAGCAACCTTGTGAGATAGGAATTCAACCAGGTCAGTTGTTCCTGTGGGAAT
GGAGTTCCATGGGTACTCGAGATTCCTCGAGTCGCTTCCATCGTCATCCTCAGACTTTTG
TCCAAACCAGTGGACCTTCATGGTCTTGTAACCCAGATTTTGTATTTTTCTTGGGATTTA
TGTATCAAGTGAGTGTCCACCAACTAACAGTAGTCCTGGGTTGGTTAACACAAAGGCCTG
TTTTTTACAAATTATTTTTCCAAAAAACCGGTCGTTACACACACGGAAGCGGGGATTTGC
AGTGGTGCCAGAGCTNCATAGAGANAAATAAGAGATATAATTATTTTGGGAGGTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_26979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None