barSeed - Barley Seed Development Database

Probe CUST_211_PI415269222

Source Contig TA28431_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_211_PI415269222	Hv_44K_v2	TTACACGCAGCTTTTTTCCTTGCACTTTTATTACGGTGGCCGGCCTTTTGCCATTGAAGA	67	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56278.2	2119	7e-23	554 - 610	100	57 / 57	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC	MLOC_56278.1	1729	7e-23	554 - 610	100	57 / 57	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
JLOC1	JLOC1_36383.1	1904	4e-23	308 - 364	100	57 / 57	plus

Contig Sequence (1236 bp)

>TA28431_4513 1236 Hv_44K_v2
AGCAAGCAAGCACGGCTGTCCGTCGCAGCTTGACACCGATGCACAACAACCACCACTACG
TTACACATTACACGCAGCTTTTTTCCTTGCACTTTTATTACGGTGGCCGGCCTTTTGCCA
TTGAAGACAGCGCCGCACCGCAGCAGCTCCATCAATAAAACCCGCCCTGTCCTGTCCTGT
CCTCACACTCACTCATCACACTCCACCACCACCACCCCCATCCATCAGACAAGAGAGAGA
GAGCGTCTGCAGTCTGCAGCCTGCAGCAGCCATGGCCAAGGAGGTGAGCGAGGAGCCGGA
GCACGCCGCGCCGGCGCGCAAGGACTACTCGGACCCGCCGCCGGCGCCGCTGTTCGACAT
GGGGGAGCTCCGGATGTGGTCCTTCTACCGGGCGCTCATCGCCGAGTTCGTCGCCACGCT
GCTCTTCCTCTACATCACCGTCGCCACCGTCATCGGCTACAAGGTGCAGTCGGCGGCCGA
CCCGTGCGCCGGCGTCGGGGTGCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGT
CCTCGTCTACTGCACCGCCGGCATCTCGGGCGGCCACATCAACCCGGCCGTCACCTTCGG
CCTCCTCCTCGCGCGCAAGGTGTCGCTGCTGCGCGCCGTCATGTACATCGTGGCGCAGTG
CGCCGGCGGCATCGTGGGCGCCGGCATCGTCAAGGGCATCATGAAGGACGCGTACCAGGC
CAACGGCGGCGGCGCCAACATGGTCGCCTCGGGCTTCTCCCGAGGCACCGCGCTGGGGGC
AGAGATCGTCGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACCCCAAGCG
CAGCGCCCGCGACTCCCACGTCCCCGTGCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTT
CATGGTGCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCAGGAGCCT
CGGCGCCGCGGTCATCTACAACAAGAAGGCCGCATGGGACAACCACTGGATCTTCTGGGT
CGGCCCGTTCGTCGGAAGCGCTGGCGGCGGCGGCGTACCACCAAGTACATCCTCCGGGCG
GCGGGCATCAAGGCGCTCGGCTCCTTCCGGAGCAACCGGAGCAACTGAACACGCCGGGCA
ATAATTTAATGCAACGGTGGCAATACTGCTCCTCCGTGTCATCCGGGGCTAACTATCCAC
ACAAAACGGACGGGCTTCCTGTTGGCAATAATGGCT

Homology of Contig TA28431_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g16450.1	338	4e-138	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi5g15970.1	288	2e-119
Arabidopsis v10	AT2G16850.1	278	3e-127	\| Symbols: PIP3B, PIP2;8 \| plasma membrane intrinsic protein 2;8 \| chr2:7301647-7303180 FORWARD LENGTH=278