- Probe CUST_20963_PI390587928
- Source Contig U35_41745
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20963_PI390587928 | Hv_44K_v2 | ACAACAAGGTCATTCCTTTCCATTTCCCTCCTGGTGATACTTCAACTGAAAGAACATTGT | 128 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.268 | 1.177 | 1.302 | 1.017 | 0.709 | 0.553 |
| Raw | 223.376 | 274.929 | 313.662 | 351.873 | 94.318 | 79.577 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354961 | 1959 | 7e-23 | 981 - 1040 | 98 | 59 / 60 | plus | ABC07126 ABC39121 ABC40829 ABC41063 ABC49808 |
| MLOC | MLOC_1163.1 | 770 | 7e-23 | 31 - 90 | 98 | 59 / 60 | minus | ABC07126 ABC39121 ABC41063 |
| Harvest21 | ABC41063 | 645 | 3e-25 | 97 - 156 | 100 | 60 / 60 | minus | ABC41063 |
| Harvest21 | ABC39121 | 578 | 3e-25 | 98 - 157 | 100 | 60 / 60 | minus | ABC39121 |
| Harvest21 | ABC36909 | 188 | 3e-25 | 129 - 188 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43860 | 645 | 3e-25 | 97 - 156 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_43011 | 578 | 3e-25 | 98 - 157 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_41745 | 188 | 3e-25 | 129 - 188 | 100 | 60 / 60 | plus |
Contig Sequence (188 bp)
>U35_41745 188 Hv_44K_v2 GATCAAAGCGCCTAGATAATGATCTCACTCGNAACCAAGCTGCTTTGCTATTTCATTTGG CACTATCCCTAATTGGAAGTACAATGCACCTCAACCTAGTGTTGAGCAATTCCAGATGCA AATTGCTAACAACAAGGTCATTCCTTTCCATTTCCCTCCTGGTGATACTTCAACTGAAAG AACATTGT
Homology of Contig U35_41745 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |