barSeed - Barley Seed Development Database

Probe CUST_20831_PI390587928

Source Contig U35_47479

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20831_PI390587928	Hv_44K_v2	TGATGCCGTTCCTGATCGACATCAACAACCTCGACGCCAGCTTCGTGTACGCCACAAGGA	170	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355935	3049	2e-24	1359 - 1418	100	60 / 60	plus	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
MLOC	MLOC_37378.1	2107	2e-24	413 - 472	100	60 / 60	plus	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
JLOC1	JLOC1_24201.1	2597	8e-25	413 - 472	100	60 / 60	plus
Harvest21	ABC48580	670	3e-25	171 - 230	100	60 / 60	plus
Harvest21	ABC01732	3083	3e-25	1348 - 1407	100	60 / 60	plus
Harvest35	U35_47479	670	3e-25	171 - 230	100	60 / 60	plus
Harvest35	U35_14193	3110	3e-25	1383 - 1442	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_47479 670 Hv_44K_v2
GATCAAACGCCTCACCGAGTTCCCTCCCAAGAGCACTCTGGATCCGAGCAAGTACGGCGA
CCACACCAGCACCATGACCGAGGAGCACGTGGCCAAGAGCCTGGAGGGCCTCACCGTGCA
GCAGGCGCTCGCCGGCAACAGGCTCTACATCGTAGACCAGCACGACAACCTGATGCCGTT
CCTGATCGACATCAACAACCTCGACGCCAGCTTCGTGTACGCCACAAGGACGCTGCTCTT
CCTGCGAGGGGACGGCACGCTGGCGCCGGTCGCCATCGAGCTGAGCTCGCCGCTGATCCA
GGGCGAGCTGACCACCGCCAAGAGCGCCGTGTACACGCCGCAGCACGCCGGCGTGGAGGG
CTGGATATGGCAGCTCGCCAAGGCCTACGCCTCCGTGAACGACTACGGGTGGCACCAGCT
CATCAGCCACTGGCTCAACACGCACGCCGTCATGGAGCCCTTCGTCATCGCCACCAGGGC
GACGTGGAGCTGCAGGCGTGGTGGAAGGAGGTGAGGGGAGGGTCGGGCACGGCGACCTCA
AGGGACGCGGCGTGGTGGCCAAAGATGCAGACGGTGGCGGAGCTGATCAAGGCGTGCGCC
ACCATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTAC
TCGGGCTACC

Homology of Contig U35_47479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49350.1	698	1e-80	protein\|lipozygenase protein, putative, expressed
Brachypodium v1_2	Bradi1g09270.1	864	6e-91
Arabidopsis v10	AT3G22400.1	886	6e-56	\| Symbols: LOX5 \| PLAT/LH2 domain-containing lipoxygenase family protein \| chr3:7927011-7931167 FORWARD LENGTH=886