barSeed - Barley Seed Development Database

Probe CUST_18828_PI390587928

Source Contig U35_15033

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18828_PI390587928	Hv_44K_v2	GTTAAAAGGCATTTTGTAGTATCTTATGCTAAGATTTTGAGGAAGTTGGTCGGACTATCA	627	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38744.1	562	9e-22	508 - 562	100	55 / 55	plus	ABC02466 ABC02467 ABC02468 ABC39104
JLOC1	JLOC1_25213.1	870	8e-25	508 - 567	100	60 / 60	plus
JLOC1	JLOC1_38868.13	1446	6e-21	621 - 679	97	58 / 60	plus
JLOC1	JLOC1_38868.9	2757	6e-21	1932 - 1990	97	58 / 60	plus
JLOC1	JLOC1_38868.8	1450	6e-21	625 - 683	97	58 / 60	plus
Harvest21	ABC02467	785	3e-25	628 - 687	100	60 / 60	plus	ABC02467
Harvest21	ABC02466	831	3e-25	27 - 86	100	60 / 60	minus	ABC02466
Harvest21	ABC39104	505	6e-22	83 - 142	97	58 / 60	minus	ABC39104
Harvest35	U35_15034	1550	3e-25	22 - 81	100	60 / 60	minus
Harvest35	U35_15033	783	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (783 bp)

>U35_15033 783 Hv_44K_v2
CCGCTTTCCTCCCTCCCGCTCCGCCGCCGCCGCCGCCGCCACCTCCTGCGCAGGCAGCCC
ACCGCGGAGCGAGGTCGAATCAGCCATGGCAGACGCCAAGGCCACGACGGCGGTCACCCT
CCGCACCCGCAAGTTCATGACCAACCGCCTGCTCGCCCGCAAGCAGTTCGTGCTCGAGGT
CATCCACCCCGGCCGCGCCAACGTCTCCAAGGCGGAGCTCAAGGATAGGCTGTCCAAGGT
GTACGAGGTCAAGGACCCCAACTGCATCTTCGTCTTCAAGTTCCGCACCCACTTCGGAGG
CGGCAAGTCCTCCGGATTCGGTCTCATCTACGACAACCTCGAAGCCGCCAAGAAGTTCGA
GCCCAAGTACCGCCTCATCAGGAACGGTCTTGCTACCAAGGTAGAGAAGTCACGCAAGCA
GATCAAGGAAAGGAAGAACAGAACAAAGAAGATCCGTGGTGTGAAGAAGACCAAGGCCGG
AGATGCCAAGAAGAAATAAGCACATTTCTGTCTTCATCCTTTCACCATCAGCCTTTGCTT
GGTTTAGCACCGTATCCCTGTGCCAATGTTGCTGAGTGCTTAATTATGACTAGAAAAGAC
TTTGCCATTTATGTCATCTCCTGGTATGTTAAAAGGCATTTTGTAGTATCTTATGCTAAG
ATTTTGAGGAAGTTGGTCGGACTATCATATTATACCTGAAAAAAAAAAAAAAAAAGTTGC
TCTTGATTTTGGCCATTGAGTAGTCAAATTGCATTGTGTGGTTTAAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_15033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52490.1	139	7e-74	protein\|40S ribosomal protein S24, putative, expressed
Brachypodium v1_2	Bradi1g38010.1	138	6e-82
Arabidopsis v10	AT3G04920.1	133	4e-69	Ribosomal protein S24e family protein \| chr3:1360989-1362065 FORWARD LENGTH=133