barSeed - Barley Seed Development Database

Probe CUST_18804_PI390587928

Source Contig U35_27019

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18804_PI390587928	Hv_44K_v2	GTTTCATGCGGTTGATCACCCAACATGTATTTTGGCCTTGTCGTTGGCGACTGGAAAAAA	331	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365753	4088	7e-23	3988 - 4044	100	57 / 57	plus	ABC06000 ABC15484 ABC16853
MLOC	MLOC_11279.2	1598	7e-23	1502 - 1558	100	57 / 57	plus	ABC16853
MLOC	MLOC_11279.1	1571	7e-23	1445 - 1501	100	57 / 57	plus	ABC16853
JLOC1	JLOC1_7458.1	1530	4e-23	1403 - 1459	100	57 / 57	plus
Harvest35	U35_27019	402	3e-25	332 - 391	100	60 / 60	plus

Contig Sequence (402 bp)

>U35_27019 402 Hv_44K_v2
TAACGTACAGCATAATTTCGTTTGTCGCTGCCGCTGCCCTCACGGTCGCCTTCACAGTTT
ACGCCAAGAAGGCGCTAAACAACATAAAAAGCCCAGATGATACCTCAGAGGACCAACCTG
CCGCTGGCTCTGCTGGGGCGACTGCACTGAAGAATGGCCATCAGGACGTGCATATCCTGT
AGCTGTACATGTCGTATGAGTATGATGGAAAATGTATGTATTCGTTCATTTCATTAGAGA
AAAATAGGTAGTAGCTAGGCTCTGACAGCAGGTGGATGCACCTGTCTTCTAACTAGATAA
ATATGTATGGTTTCACTACACCACTTGATTAGTTTCATGCGGTTGATCACCCAACATGTA
TTTTGGCCTTGTCGTTGGCGACTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_27019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None