barSeed - Barley Seed Development Database

Probe CUST_18759_PI390587928

Source Contig U35_15057

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18759_PI390587928	Hv_44K_v2	AACCTTTTTTGTCAAACCGTCTCTTAACAGAGCGTCTGCTTAATAGGAAATCAGCGTTAC	952	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32988.2	5522	2e-24	2024 - 2083	100	60 / 60	minus	ABC02019 ABC06879
MLOC	AK249309.1	1024	3e-22	963 - 1021	98	59 / 60	plus	ABC02018 ABC02019 ABC02022
JLOC1	JLOC1_21433.4	1198	8e-25	944 - 1003	100	60 / 60	plus
JLOC1	JLOC1_21433.3	1278	8e-25	1024 - 1083	100	60 / 60	plus
JLOC1	JLOC1_21433.2	1143	8e-25	889 - 948	100	60 / 60	plus
JLOC1	JLOC1_21433.1	1362	8e-25	1108 - 1167	100	60 / 60	plus
Harvest21	ABC02019	1032	3e-25	953 - 1012	100	60 / 60	plus	ABC02019
Harvest35	U35_15057	1038	3e-25	953 - 1012	100	60 / 60	plus

Contig Sequence (1038 bp)

>U35_15057 1038 Hv_44K_v2
GGTTAATATCGCGGCATCGGGTCCTGCGCTACGCTGGGCGCTCGCTGCTCCCTCCCCTCC
TCCTCGCCTCCGCTGCCGTCGCGCGAGATCAACCCCGCCGCCATGGCTGGAGAAGCTGAT
GGGAAGACCTACCAGGTATCAAGGATGCCCCCTGCTGCTCTCAATGAGCGCATCCTTTCT
TCCATGTCTCAAAAGCATGTTGCTGCTCACCCATGGCACGACCTGGAGATAGGTCCAGGA
GCTCCTGCAGTTTTCAACTGTGTTGTTGAGATTCCTAGAGGCAGCAAAGTCAAGTATGAG
TTGGACAAAGCAACTGGTCTTATCAAGGTTGATCGTGTTCTTTACTCCTCAGTTGTGTAC
CCACACAACTATGGCTTCATTCCACGCACACTCTGTGAGGACAATGACCCGATGGACGTC
CTTGTCCTGATGCAGGAACAAGTTGTCCCTGGTTGCTTCCTGCGTGCCCGTGCTATTGGG
CTTATGCCTATGATTGACCAGGGTGAGAAAGATGACAAGATCATAGCTGTCTGTGCTGAT
GATCCTGAGTACCGTCACTTCAGAGACATCAGTGAACTTCCCCCGCATCGCCTACAGGAG
ATCCGTCGCTTCTTTGAAGACTACAAGAAGAATGAAAATAAGGAGGTTGCAGTGAATGAT
TTCCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATGGACCTCTACGGTTCG
TACATCATGGAGGGCTTAAGGAAGTGATCTCCAGCTGGTGGACTGCAGATGCTACGCGAT
CCGCCCTACGGCTTATCAATAGTACGACAGACATTTATGTTAACATGATGATCGAAAACC
ATCAGTCTGTCGGGGATATATATATGCACCTTCTGTCCATGCTGAGGCAAGCATGGGTAC
ATTTTCCTTCCGTATATGCCATGTCAGGTCCAAGTATTTGACCTCGTGCTGGAACCTTTT
TTGTCAAACCGTCTCTTAACAGAGCGTCTGCTTAATAGGAAATCAGCGTTACATCAAAAA
AAAAAAAAAAAAAAAAAA

Homology of Contig U35_15057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47600.1	215	1e-145	protein\|soluble inorganic pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi3g52740.2	214	5e-146
Arabidopsis v10	AT3G53620.1	216	2e-120	\| Symbols: AtPPa4, PPa4 \| pyrophosphorylase 4 \| chr3:19881491-19883308 FORWARD LENGTH=216