barSeed - Barley Seed Development Database

Probe CUST_18696_PI390587928

Source Contig U35_25607

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18696_PI390587928	Hv_44K_v2	TCGATCGACATGGTGCCCAACAACAACACCGTCGACAAGGACTACCGTGACCCTCGCCCG	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18325.1	1446	2e-24	250 - 309	100	60 / 60	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
JLOC1	JLOC1_12679.1	1127	8e-25	30 - 89	100	60 / 60	plus
Harvest21	ABC26109	465	3e-25	9 - 68	100	60 / 60	plus
Harvest35	U35_25607	467	3e-25	9 - 68	100	60 / 60	plus

Contig Sequence (467 bp)

>U35_25607 467 Hv_44K_v2
CATCTCCATCGATCGACATGGTGCCCAACAACAACACCGTCGACAAGGACTACCGTGACC
CTCGCCCGGCGCCGCTCATCAACGCCGGCGAGCTGGGCAAGTGGTCACTCTGGCGCGCCG
TCATCGCCGAGTTCACCGCCACGCTCCTCTTCGTCTACGTCACCGTCGCCACCGTCATCG
GCCACAAGCGCCAGACGGACGGCACCGTCGGCTGCGGCGGCGCGGGCATCCTCGGCATCG
CGTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCGTCTCCGGCG
GCCACATCAACCCCGCCGTCACCTTCGGCCTCCTGCTGGCCCGCAAGGTGTCCCTCGTCC
GCGCGCTGCTCTACATGGTCGCCCAGTGCCTCGGCGCCATGTGCGGCGCCGGCCTCGTCA
GGGCCGTGCACGGCGCCCAGTACGCGCGCCACGGTGGGGGCGCCAAC

Homology of Contig U35_25607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26690.2	286	8e-74	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi1g28760.2	266	5e-75
Arabidopsis v10	AT3G53420.1	287	4e-72	\| Symbols: PIP2A, PIP2, PIP2;1 \| plasma membrane intrinsic protein 2A \| chr3:19803906-19805454 REVERSE LENGTH=287