barSeed - Barley Seed Development Database

Probe CUST_18503_PI390587928

Source Contig U35_35045

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18503_PI390587928	Hv_44K_v2	CGTCTATTCTCTGGCCCCTCTGTTCTTTTGTTTTTGTTAGCCAAAAAGGCTTGTTCTTTA	729	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26862.1	899	2e-24	80 - 139	100	60 / 60	minus	ABC05174
MLOC	MLOC_78516.3	2753	3e-21	838 - 894	98	56 / 57	minus	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC	MLOC_78516.1	2520	3e-21	841 - 897	98	56 / 57	minus	ABC05171 ABC05172 ABC05174 ABC30943
MLOC	MLOC_78516.2	2407	3e-21	728 - 784	98	56 / 57	minus	ABC05171 ABC05172 ABC05174 ABC30943
MLOC	MLOC_78516.10	2600	3e-21	673 - 729	98	56 / 57	minus	ABC05171 ABC05172 ABC05174 ABC30943
MLOC	MLOC_78516.4	2640	3e-21	725 - 781	98	56 / 57	minus	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC	MLOC_9352.1	364	3e-21	263 - 322	97	58 / 60	minus	None
JLOC1	JLOC1_18203.1	902	8e-25	84 - 143	100	60 / 60	minus
JLOC1	JLOC1_52329.4	803	2e-21	710 - 766	98	56 / 57	minus
Harvest35	U35_35045	797	3e-25	730 - 789	100	60 / 60	plus

Contig Sequence (797 bp)

>U35_35045 797 Hv_44K_v2
TGGATAACCCAAGAGGTGATAACATCGTGCGAGAGACTTGCCGGCCAAGATGCCAATGTG
ACTACAGTGCCTGTCTCAGTTTTGCGATTGACACGGCAGCTGACTCGGTTGTTTGAGTGG
ACGAATGATGTTGCTGATAGATTGGCATTTTCAGATGTTTTGACAAGCGATACTGTCTTC
TCAGTTCCTATGACTGAGACATATAGCCTTCTCGGTGTGGACGCAAAAGACGTCAGTTCA
CTGGAGAAGTATCTGCAGGATTATTTCACCAACATACTGAAGAAGTTGAAAGACTTTAAG
GCTCAATCAAAGCAAACAGATATTTTCTTTTGAGAGGAATACTTGTTTATGTTGTTGTAA
AAGTAATATACACTGTGACAGGGATACATCAGCAGAGGCATGCTCCTTTTGGAACTTGCA
ATCTTTCTTTCTTTTTTTCCTAGTTTGTTCCTCGTGTATTCATGAATTTGTAAAGGTTAT
ACGATTTATTTAGTTAGCGGCCGCTAAGAAAACGTGGAGTCCATCAAGATGGCGATAAAC
TGCAGGTTTGCTCGGCTGCAACATATAAATTGTGAGTTTTCCTACTGATTTTACATTCAA
TCCTCCCCTTAGAAAATCTGAACAATTGGAATCTTGCTTCGTTGTTTTCTCCATGGTCAT
GGCACAGAATGGGAGCACCAAGCATGGCCGCCTCATGGTGTGCATCAGCCAGTGTGACGA
AGGTTGTTTCGTCTATTCTCTGGCCCCTCTGTTCTTTTGTTTTTGTTAGCCAAAAAGGCT
TGTTCTTTAGTTAATTG

Homology of Contig U35_35045 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44000.1	387	4e-56	protein\|uncharacterized protein ycf39, putative, expressed
Brachypodium v1_2	Bradi3g42580.1	390	2e-54
Arabidopsis v10	AT4G35250.1	395	3e-55	NAD(P)-binding Rossmann-fold superfamily protein \| chr4:16771401-16773269 REVERSE LENGTH=395