barSeed - Barley Seed Development Database

Probe CUST_17890_PI390587928

Source Contig U35_4521

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17890_PI390587928	Hv_44K_v2	GGTTTAGCTTGTCTCACTCAGTTAGTCAATTCCATTTTGTTGGATGTAATTTGAATGTAG	1003	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10922.4	3242	3e-21	1476 - 1535	97	58 / 60	minus	ABC04416 ABC08901 ABC08902 ABC10269
JLOC1	JLOC1_7189.1	2293	2e-21	529 - 588	97	58 / 60	minus
JLOC1	JLOC1_7187.2	1644	2e-21	1078 - 1137	97	58 / 60	plus
Harvest21	ABC10269	1199	3e-25	1035 - 1094	100	60 / 60	plus	ABC10269
Harvest35	U35_4521	1168	3e-25	1004 - 1063	100	60 / 60	plus

Contig Sequence (1168 bp)

>U35_4521 1168 Hv_44K_v2
ACGAGGCCGACCAAACCCTAGGCAATCTGCCGGCCATGGCGATGTCGGATCTCGCGGCTG
CGGTGATCTCCAAGGCCAACGGCGGCGTGGACGGCGAGGAGCCGGTGGAGATCCGGGAGG
TGTGGGCGGACAATCTGGAGGCGGAGTTCGCGCTGATCCGCGACGTCGTCGACGAGTTCC
CCTTCGTCGCCATGGACACCGAGTTCCCGGGCATCGTCTGCCGCCCCGTCGGTGCCTTCC
GCTCCCCGGCAGACTACAACTACGCCACCCTCAAGGCCAACGTCGACATGCTGCACCTCA
TCCAGCTGGGGCTCACCTTCTCGGGCCCCACGGGCGAGCTCCCTGCCCTCGGCGCCGGAC
GCCGCCGATGCGTCTGGCAGTTCAACTTCCGCGAGTTTGACGACGAGCGCGACATCTTCG
CCACCGACTCCATCGAGCTGCTCCGCCACAGCGGCATCGACTTCCGCCGCAACGCCGAGC
GCGGCGTCGACGCCCGCCGCTTTGCCGAGCTGCTCATGTCCTCGGGCGTCGTGCTCAACG
ACGCCGTCTACTGGGTGACCTTCCATGCCGGATACGACTTTGGCTACCTGCTCAAAATCC
TCACCTGCAACAGCCTCCCCGACACACAGGCTGGCTTCTTCAAGCTGATGAAGATATATT
TCCCCACCGTCTATGACATCAAGCATCTCATGAAGTTCTGCAACAGCCTGCACGGAGGCC
TGAACAAGCTTGCCGAGTTGCTCGATGTGGAGCGTGTTGGAGAGTCACACCAGGCCGGGT
CCGACAGCCTGGTCACGTCTTGTGCGTTCTGGAAACTCAAGGATTCCTTCTTTGCTGGAT
CAACTGAGAAATATGCTGGCGTGCTGTATGGGCTCAACGCAGAGAATGGTGTCAGTGCGC
ATTGATGGATGATGCTCCCTTTGAATAGCTCTGTGAATGGGTTGATTTAGGACAGAAAGA
GGTGGCGAGTGAGCTAGCAGGCAAACTGATGACCAAATATGTAGGTTTAGCTTGTCTCAC
TCAGTTAGTCAATTCCATTTTGTTGGATGTAATTTGAATGTAGTGTTTTTCAGTTATTCC
CATTGAACTAGTGTTTTCTACTTATGCTGTTAGCTTTCTCTTGAATATTACTTGAATAGA
AAAGTATCACCTCTATAAAAAAAAAAAA

Homology of Contig U35_4521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55300.1	296	0.0	protein\|CAF1 family ribonuclease containing protein, putative, expressed
Brachypodium v1_2	Bradi3g54110.1	296	0.0
Arabidopsis v10	AT2G32070.1	275	2e-142	Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr2:13640829-13641656 REVERSE LENGTH=275