barSeed - Barley Seed Development Database

Probe CUST_16983_PI390587928

Source Contig U35_13271

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16983_PI390587928	Hv_44K_v2	GCGCGATGATCCGGAGGCTCCACCTCGACGAACAGGGATGACTGGAGTTCCAAAAGCTTA	676	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356234	1797	3e-22	756 - 814	98	59 / 60	plus	ABC07975 ABC07976 ABC08667 ABC08668
Harvest21	ABC51801	420	3e-25	361 - 420	100	60 / 60	plus
Harvest35	U35_13271	736	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_13271 736 Hv_44K_v2
GCGGCGACCTCCTACCCTCCGCACACACCCCCACCGCTGACCTCCTCCCCCTCTCCTCCA
TCCATTCGCCTCATCGCTACCCTCGCCCGCTCGCCGCACCCGAAATCCACAATGCCTTTC
TCTCATCCCCACCCAGAACCAGCCGTCGATGCTGCGGCCCCAGCCCACCCGCATCGAGCT
CCACAGCTCCGAACGCGACGAGATTGAGGACCACATCCGATCCAAAGCCGCCGCCGCCGC
CGAATCCTCGGCCTTCTCAACCCCGCCGACGTCCAACCCCATCGCCAACCCGATCCTCCG
CATCCTCCACCCGCACACCAACGCCGCGCCAACCAAGGCCTAGCGCATCGGCCTCCACCC
CCCCGCCCCCCAAACCCTAGCCCCATCCCCAACCCCATTCCCATGGAGGTCGAGGTCAAG
CTCCGCCTCCACGATGCGGCCGCGCACCGCCGCCTCTCCGCCTACCTCGCGCCCCGCCTC
CTCCGCACCGACGCCCAGCGCAACGCCTTCTTCGACGCCCCAGCCCGGCCCCTCCGTGGG
AATCGCAGGTTGTTGTTCTGCGCGGGGCTAATCGGGGGACTGTTTCGCCGTGCGTGTTTT
GGGCAGGGAGGAGCAGGGCCTCGAGGTACGACGCGGGAGCGCCTCCGAGCAGGGAAGGGA
GGGGTGGGGCCTGGAAGCGCGATGATCCGGAGGCTCCACCTCGACGAACAGGGATGACTG
GAGTTCCAAAAGCTTA

Homology of Contig U35_13271 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None