barSeed - Barley Seed Development Database

Probe CUST_1696_PI390587928

Source Contig U35_14035

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1696_PI390587928	Hv_44K_v2	CTGATGGCACCTTCTTGTTGCCATCAGCAATGGAAATGAAAATGTTGCCTTCCTGTTCTC	582	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376214	661	2e-24	598 - 657	100	60 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00179 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00405 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC29964 ABC31599 ABC32138 ABC47839
MLOC	MLOC_79434.1	535	2e-24	174 - 233	100	60 / 60	minus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00405 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC29964 ABC31599 ABC32138 ABC47839
MLOC	MLOC_15473.1	390	7e-23	198 - 257	98	59 / 60	minus	ABC00405 ABC29964 ABC32138
MLOC	AK375327	649	3e-22	591 - 649	98	58 / 59	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00179 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00405 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839
JLOC1	JLOC1_52914.1	495	8e-25	134 - 193	100	60 / 60	minus
JLOC1	JLOC1_10617.1	330	4e-23	138 - 197	98	59 / 60	minus
Harvest21	ABC29964	173	3e-25	75 - 134	100	60 / 60	plus	ABC29964
Harvest21	ABC00129	659	1e-24	583 - 641	100	59 / 59	plus
Harvest21	ABC00205	659	1e-23	582 - 641	98	59 / 60	plus
Harvest21	ABC00719	635	6e-22	559 - 618	97	58 / 60	plus
Harvest21	ABC39289	371	2e-21	24 - 82	97	57 / 59	minus
Harvest35	U35_14035	662	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_14043	659	1e-23	582 - 641	98	59 / 60	plus

Contig Sequence (662 bp)

>U35_14035 662 Hv_44K_v2
GCCCAAACCTCCAAGCGCTCCTCAACCTCCCCTCGCACCGGCGACATGGCCCGCACCAAG
CAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCC
GCCCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCACCGCTTCCGCCCCGGC
ACCGTCGCGCTCCGCGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAG
CTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTC
CAGTCCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCCGAGTCCTACCTCGTCGGGCTGTTC
GAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATC
CAGCTCGCTCGCCGCATCCGTGGAGAGAGGGCCTAGGCTGCAGTCTGAGATCCATGCGTC
GTCTCTTAGATCCCTGTTAGGCATCGGTGGAAATGTGTGTGCTGCAAGTGTTTCAGAATG
TGTCTGTGTTGTTCTTGTCATGGTGGGTGTGTTGTGCCTAATCTGATGGCACCTTCTTGT
TGCCATCAGCAATGGAAATGAAAATGTTGCCTTCCTGTTCTCAAAAAAAAAAAAAAAAAA
AA

Homology of Contig U35_14035 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	9e-82	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-82
Arabidopsis v10	AT5G65360.1	136	3e-82	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136