barSeed - Barley Seed Development Database

Probe CUST_1668_PI390587928

Source Contig U35_14047

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1668_PI390587928	Hv_44K_v2	CTGGTGTCACCATCTTGTTGTCATCGGTAATTTAAATGAGAAATGTTGGATATCTGTTTA	598	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357111	1705	2e-23	1640 - 1697	100	58 / 58	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00179 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC12246 ABC14926 ABC31599 ABC32001 ABC32138 ABC47839
MLOC	MLOC_18282.1	712	2e-23	405 - 462	100	58 / 58	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839
JLOC1	JLOC1_12646.1	583	1e-23	404 - 461	100	58 / 58	plus
Harvest21	ABC00176	667	4e-24	590 - 647	100	58 / 58	plus	ABC00176
Harvest35	U35_14047	674	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_36645	664	2e-22	586 - 644	98	58 / 59	plus

Contig Sequence (674 bp)

>U35_14047 674 Hv_44K_v2
ATCATGACAGGGCTCAAGCCCCCGAGCACAGCGACCTCCTCCTCCCTAGTCGACCTCCCC
GCGCACCGGCGACATGGCCCGCACCAAGCAGACGGCGAGGAAGTCCACCGGTGGCAAGGC
GCCGAGGAAGCAACTGGCCACCAAGGCCGCCCGCAAGTCCGCCCCGGCCACCGGCGGCGT
CAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGCGAGATCCGCAAGTACCA
GAAGAGCACCGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGC
CCAGGACTTCAAGACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCCCTGCAGGAGGC
CGCCGAGTCCTACCTCGTCGGCCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAA
GCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGAGAGAGGGC
CTAGGCTGCTCTCTGGAAGCTGTGGTCGTTTGTTAGGTCCATCATCTTAGCCTTTGTTCC
GCGGTGGAAATGTGCGTGCTAGTTTATGTTCGTGCCATGGTGGATGTAGTGTGCCTGTCT
GGTGTCACCATCTTGTTGTCATCGGTAATTTAAATGAGAAATGTTGGATATCTGTTTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_14047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	1e-81	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	2e-82
Arabidopsis v10	AT5G65360.1	136	4e-82	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136