barSeed - Barley Seed Development Database

Probe CUST_16341_PI390587928

Source Contig U35_15618

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16341_PI390587928	Hv_44K_v2	GTAACAGGAAAATGCTTAGGAGCTCTTGGGCGCACGGAACCTGATGTGAATAGTAAAAAA	693	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359807	1857	2e-23	1673 - 1730	100	58 / 58	plus	ABC03679 ABC03680 ABC03681 ABC31564 ABC31723
JLOC1	JLOC1_47284.1	1531	1e-23	817 - 874	100	58 / 58	plus
Harvest35	U35_15618	764	3e-25	694 - 753	100	60 / 60	plus

Contig Sequence (764 bp)

>U35_15618 764 Hv_44K_v2
TTTTCTTGTGGGGAAGAAAAGTTTTATAAAAGAAGCCATCGGCGACACCCACCCGCACAA
ATCCAAACAGCATCCTCCCGTCGGCTTCCTCCCCCTCACGCGCGCGACCTCGTCGTCGTC
GGCTTCGAGATCTCGCCGCGCCTCGCCCGCCATGGACGCCGTCGACTCCGTGGTCGACCC
CCTGCGCGAGTTCGCCAAGGACAGCGTCCGCCTCGTCAAGCGCTGCCACAAGCCCGACCG
CAAGGAGTTCACCAAGGTGGCCGCGCGGACGGCCATCGGGTTCGTCGTCATGGGGTTCGT
CGGCTTCTTCGTCAAGCTCATCTTCATCCCCATCAACAACATCATCGTCGGCTCCGGCTA
GGTTGGAGGACAACATGACGCGGGGGTAGTGCGGTGCCGGCAGTTGGGCCTGCGGTGTGT
TGAAGTAGGCGCCCAAAGTTTGTTCTGAAGTTGTTGTTAAAGACCTGTTTTGTGAGAAAT
TGTCACCAGCTTAATCATGGTAATGAGTATAGATCTTAAAAGTAGCGAGTTATAAAGTTT
ATGTTTTGTCATAATTCCCTTGTGGGTGCAAAGGTCGATCGCTGATCGCAAGTGATGAAT
CCTTGGTGAAACACGCACCACCGGCCAACAACTTGGGCCACACTCACACCATTTTGAAGA
TAATTGAAATATGAAAAACGTAAGAATACATTGGTAACAGGAAAATGCTTAGGAGCTCTT
GGGCGCACGGAACCTGATGTGAATAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15618 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None