barSeed - Barley Seed Development Database

Probe CUST_1552_PI390587928

Source Contig U35_30238

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1552_PI390587928	Hv_44K_v2	TAGGCAATAGTAGGCTTATTTGGGCTGTAGTACTGTAGTATAATGTAACGATTGTAATAG	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49319.1	279	2e-23	1 - 58	100	58 / 58	minus	ABC23356 ABC30053 ABC38653
Harvest21	ABC30053	510	3e-25	411 - 470	100	60 / 60	plus	ABC30053
Harvest35	U35_30238	510	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_30238 510 Hv_44K_v2
GTCGGCTGCTTTACTTAAAGTGATGATAATTTTTCTATGTTCAGTTCTGCTGCATGATTA
AGGCCGTGCGCACTACTAGCATTTAATTGTCTGCCTTTTAGATGTAACATTGCAATTCAG
ATAATAAGTGATGTACAGTTCTGTACTGTTATGTGTCTTTGGCATTTTCTTAGAACATTT
TTGTAGCTTCAACTATGAACATTTCTATCACATACCGTATCTTTAAATTTGAATCTTGAT
TGCTTCTGTTTACTCCGAGTCTAAGATGTGTAGTAGTAGCATTTTTATTCTTATATGTTC
ATTCTTATTCATATATGTTCATTCTTATTTTTTGCACAGGTGAAATGCGAATCCAAGTCC
GAAGCTGCGAAGCATATCAGCAAAGAGTAGCATATTATGTATTGTAATTGTAGGCAATAG
TAGGCTTATTTGGGCTGTAGTACTGTAGTATAATGTAACGATTGTAATAGACTAATGTAT
NATTGTTTTGGACGAAAAAAAAAAAAAAAA

Homology of Contig U35_30238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None