barSeed - Barley Seed Development Database

Probe CUST_15522_PI390587928

Source Contig U35_36561

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15522_PI390587928	Hv_44K_v2	TGGGTTGTGTTTCGTCACTCTTTCCTGAATTCAAGATTGCAAGTTTCATTTTTAGGTCTA	45	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356610	874	6e-24	816 - 874	100	59 / 59	plus	ABC01030 ABC01040 ABC01063 ABC01108 ABC22044 ABC49720
JLOC1	JLOC1_32428.1	1126	8e-25	915 - 974	100	60 / 60	plus
Harvest35	U35_36561	697	3e-25	46 - 105	100	60 / 60	minus

Contig Sequence (697 bp)

>U35_36561 697 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGTATTTTCCGATCAACCTTTCTTCATTTAGACCTAAAAATGA
AACTTGCAATCTTGAATTCAGGAAAGAGTGACGAAACACAACCCAAAGTTCAGATGATAT
ATGGATCTTACTACGCAACAGAGCTAATAACAGAGGCAAACAAACTTGCAAGTAGTTTTG
TCAAATCATATGGGCAGATAACATGGAAGACAGCCCCTCCCACTAAGCAAAGCTAGTTTG
TTATTATCTCTTTGCAACACAGGTTCCATGCCACCAATGGTCACTTCTCTCAGGACGCAA
GTGTTTCCATTACAGCTTAACTAGTAACCACCCCTCAGGGCAAGGACAAGATGGAGGACC
GAGCCACCTTCGATGTTGTAGTCCTTGGCAGTCTTGTCATCTGCAAGCTGCTTGCCAGCA
TAAATCAGCCTTTGCTGCACAGGGGGAATGCCTTCTTTCTCCTAACACGCTCCTTGATCC
TGTCAATCGTGTCGGTGGGCTCAATGTCAATTTCAATCTCCTTCCCAGTGAGAGTCTTGA
CTTTGATCATCGTACCACCCCTGAGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGAA
TGTTGTAGTCAGCAAGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCT
GCTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATTTT

Homology of Contig U35_36561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25320.1	154	2e-51	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi4g30470.1	154	9e-52
Arabidopsis v10	AT1G31340.1	156	3e-51	\| Symbols: RUB1, NEDD8, ATRUB1 \| related to ubiquitin 1 \| chr1:11218076-11219417 REVERSE LENGTH=156