barSeed - Barley Seed Development Database

Probe CUST_14520_PI390587928

Source Contig U35_13824

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14520_PI390587928	Hv_44K_v2	ACAAGAGAGAGAGAGCGTCTGCAGTCTGCAGCCTGCAGCAGCCATGGCCAAGGAGGTGAG	52	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250563.1	1289	2e-24	46 - 105	100	60 / 60	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC	MLOC_56278.3	1287	7e-23	29 - 85	100	57 / 57	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC	MLOC_56278.2	2119	7e-23	717 - 773	100	57 / 57	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC	MLOC_56278.1	1729	7e-23	717 - 773	100	57 / 57	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
JLOC1	JLOC1_36383.1	1904	4e-23	471 - 527	100	57 / 57	plus
Harvest35	U35_13833	1378	3e-25	66 - 125	100	60 / 60	plus
Harvest35	U35_13824	633	3e-25	53 - 112	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_13824 633 Hv_44K_v2
TCGAGCACTGTTGGCCTTATCACACTCCACCACCACCACCCCCATCCATCAGACAAGAGA
GAGAGAGCGTCTGCAGTCTGCAGCCTGCAGCAGCCATGGCCAAGGAGGTGAGCGAGGAGC
CGGAGCACGCCGCGCCGGCGCGCAAGGACTACTCGGACCCGCCGCCGGCGCCGCTGTTCG
ACATGGGGGAGCTCCGGATGTGGTCCTTCTACCGGGCGCTCATCGCCGAGTTCGTCGCCA
CGCTGCTCTTCCTCTACATCACCGTCGCCACCGTCATCGGCTACAAGGTGCAGTCGGCGG
CCGACCCGTGCGCCGGCGTCGGGGTGCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCT
TCGTCCTCGTCTACTGCACCGCCGGCATCTCGGGCGGCCACATCAACCCGGCCGTCACCT
TCGGCCTCCTCCTCGCGCGCAAGGTGTCGCTGCTGCGCGCCGTCATGTACATCGTGGCGC
AGTGCGCCGGCGGCATCGTGGGCGCCGGCATCGTCAAGGGCATCATGAAGGACGCGTACC
AGGCCCACGGCGGCGGCGCCAACATGGTCGCCTCGGGCTTCTCCCGCGGCACCGCGCTGG
GGGCAGAGATCGTCGGCACCTTCGTCCTCGTCT

Homology of Contig U35_13824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g16450.1	338	2e-91	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi1g28780.1	290	2e-71
Arabidopsis v10	AT4G35100.1	280	5e-77	\| Symbols: PIP3, PIP3A, PIP2;7, SIMIP \| plasma membrane intrinsic protein 3 \| chr4:16708672-16709958 FORWARD LENGTH=280