barSeed - Barley Seed Development Database

Probe CUST_14519_PI390587928

Source Contig U35_13825

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14519_PI390587928	Hv_44K_v2	CTTTCTATCTTGTTGCTGCTTTGCCGCTCTGAATGCTCAAGCCCGAATGATCATAAAAAA	1327	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54419.2	3119	3e-22	208 - 263	100	56 / 56	minus	ABC01216 ABC01222 ABC01223 ABC01237 ABC01240 ABC01242
MLOC	MLOC_54419.1	2705	3e-22	209 - 264	100	56 / 56	minus	ABC01216 ABC01222 ABC01223 ABC01240
JLOC1	JLOC1_35029.1	1940	1e-22	1553 - 1608	100	56 / 56	plus
Harvest35	U35_13825	1398	3e-25	1328 - 1387	100	60 / 60	plus
Harvest35	U35_35890	820	5e-23	632 - 687	100	56 / 56	plus

Contig Sequence (1398 bp)

>U35_13825 1398 Hv_44K_v2
ATAAATACCACCTTCCTCCCGTCACTCCCCCACCACACACAAGCTCCAACTCCATTTTTT
TCCAGCGAGAAGAAACCACACACACTGATGGCGAAGGACGAGGTGATGGAGACCGGCGGC
GGCGGCGACTTCGCGGCCAAGGACTACACGGACCCGCCGCCGGCCCCGCTGGTGGACGCG
GCGGAGCTGGCGTCGTGGTCGCTGTACCGCGCCGTCATCGCCGAGTTCATCGCCACGCTG
CTCTTCCTCTACATCACCGTGGCCACGGTCATCGGGTACAAGCACCAGACGGACCCCGCG
GTGAACAGCGCCGCCGACGCGGCGTGCGGCGGCGTGGGCGTGCTCGGCATCGCGTGGGCC
TTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGGGGCCACATC
AACCCGGCCGTGACCTTCGGCCTCTTCCTGGCGCGCAAGGTCTCCCTGGTCCGCGCGCTG
CTCTACATGGTGGCGCAGTGCCTCGGCGCCATGTGCGGGGTCGGCCTCGTCAAGGCCTTC
CAGAGCGCCTACTTCGTCAGGTACGGCGGCGGCGCCAACACGCTCGCCGCCGGATACTCC
AAGGGCACCGGCCTCGCCGCGGAGATCATCGGCACCTTCGTGCTCGTCTACACCGTCTTC
TCCGCCACCGACCCCAAGCGCAGCGCACGCGACTCTCACGTCCCGGTGTTGGCGCCCCTC
CCGATCGGCTTCGCCGTGTTCATGGTCCACCTGGCCACCATCCCGATCACCGGCACCGGC
ATCAACCCGGCCAGGAGCCTGGGGGCCGCCGTCATCTACAACAAGGACAAGGCCTGGGAT
GATCAGTGGATCTTCTGGGTCGGCCCCATGATCGGCGCGGCGATCGCGGCCTTCTACCAC
CAGTACATACTCAGGGCCGGCGCCATCAAGGCCCTCGGCTCCTTCAGGAGCAACGCGTAA
CGAGTTATCCATGTGATGTGCATGCAAGATTGAAGCAATGGCGACCTGTGCTGTGTCCAT
CCATCCAAAGAGAAAGCCGCTTTTGCAACTTCTCGACAGTTCAGTTGGCCGCTGCAATGG
TCGTGTTATTTATGTGTCGGCAGCTGCATATGCGTATGTGCCCAGTCATGCGTGCCGTGT
GTTGTAATTCGGTCCATGGGATCGCTTGTCTTAATTAGCCCGCATTCCTTTTCCTGTTTT
AATTTAGCGACCATATGTATGATCGACCCAACGTCGCCACCTTCTATCCAAATCATCAAT
CCGCCAAGCAAGAGATTCATCCCAAAAAAAAAAAAAAAAAAGGTTGTGCCGAGTGGTGGT
GACCTTGCTTTCTATCTTGTTGCTGCTTTGCCGCTCTGAATGCTCAAGCCCGAATGATCA
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_13825 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26690.1	291	0.0	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi1g28760.1	291	0.0
Arabidopsis v10	AT3G54820.1	286	2e-165	\| Symbols: PIP2D, PIP2;5 \| plasma membrane intrinsic protein 2;5 \| chr3:20302117-20303738 FORWARD LENGTH=286