barSeed - Barley Seed Development Database

Probe CUST_14503_PI390587928

Source Contig U35_13833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14503_PI390587928	Hv_44K_v2	CCGCTGTGAGTGACAAGTGCTGCAATTTGGAGCATGAATTATTAATTTATTGTGTGATGC	1249	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250563.1	1289	2e-24	1230 - 1289	100	60 / 60	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC	MLOC_56278.3	1287	2e-24	1039 - 1098	100	60 / 60	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
MLOC	MLOC_56278.2	2119	2e-24	1988 - 2047	100	60 / 60	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242
JLOC1	JLOC1_36383.1	1904	8e-25	1656 - 1715	100	60 / 60	plus
Harvest21	ABC41198	245	3e-25	34 - 93	100	60 / 60	minus
Harvest21	ABC01234	565	3e-25	18 - 77	100	60 / 60	minus
Harvest21	ABC01216	1255	3e-25	1175 - 1234	100	60 / 60	plus	ABC01216
Harvest35	U35_13833	1378	3e-25	1250 - 1309	100	60 / 60	plus
Harvest35	U35_43674	565	1e-23	22 - 81	98	59 / 60	minus

Contig Sequence (1378 bp)

>U35_13833 1378 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGACACTCACTCATCACACTCCACCACCACCACCCCCATCC
ATCAGACAAGAGAGAGAGAGCGTCTGCAGTCTGCAGCCTGCAGCAGCCATGGCCAAGGAG
GTGAGCGAGGAGCCGGAGCACGCCGCGCCGGCGCGCAAGGACTACTCGGACCCGCCGCCG
GCGCCGCTGTTCGACATGGGGGAGCTCCGGATGTGGTCCTTCTACCGGGCGCTCATCGCC
GAGTTCGTCGCCACGCTGCTCTTCCTCTACATCACCGTCGCCACCGTCATCGGCTACAAG
GTGCAGTCGGCGGCCGACCCGTGCGCCGGCGTCGGGGTGCTCGGCATCGCCTGGGCCTTC
GGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCGGGCGGCCACATCAAC
CCGGCCGTCACCTTCGGCCTCCTCCTCGCGCGCAAGGTGTCGCTGCTGCGCGCCGTCATG
TACATCGTGGCGCAGTGCGCCGGCGGCATCGTGGGCGCCGGCATCGTCAAGGGCATCATG
AAGGACGCGTACCAGGCCAACGGCGGCGGCGCCAACATGGTCGCCTCGGGCTTCTCCCGA
GGCACCGCGCTGGGGGCAGAGATCGTCGGCACCTTCGTCCTCGTCTACACCGTCTTCTCC
GCCACCGACCCCAAGCGCAGCGCCCGCGACTCCCACGTCCCCGTGCTGGCGCCGCTCCCC
ATCGGCTTCGCCGTCTTCATGGTGCACCTCGCCACCATCCCCATCACCGGCACCGGCATC
AACCCCGCCAGGAGCCTCGGCGCCGCGGTCATCTACAACAAGAAGGCCGCATGGGACAAC
CACTGGATCTTCTGGGTCGGCCCGTTCGTCGGAGCGCTGGCGGCGGCGGCGTACCACCAG
TACATCCTCCGGGCGGCGGCCATCAAGGCGCTCGGCTCCTTCCGGAGCAGCCGGAGCAAC
TGAGCACGCCGGCCAATAATTTAATGCAACGGTGGCAGTACTGCTCCTCGTGTCCATCCG
GCGCTAGCTAGCCACACAAACGGACGGGCTTCGTGTTGGCAGTACTGCTCCTCCATCGTG
CCCATCCGGCCTCGTTCAGTGTCTGTGCATGCATGTGAGTGAGAGAGAGAGAGGCCACCA
TGGATCGCCGTTTTCACTCTTCAGTTATTACTCCTTGTCGCCGTTAATGTTGTCGAATTA
CTATATTAGCTGTTACCGTTAGTGTTGGTGTTGGATTGAACCTGTAAAACCGCTGTGAGT
GACAAGTGCTGCAATTTGGAGCATGAATTATTAATTTATTGTGTGATGCAAAAAAAAAAA
AAAAAAAAAGGCCACATTTGATTGAAAAAAAAAAAAGCTGCAGGTCGCGGCCGCTCTA

Homology of Contig U35_13833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g16450.1	338	2e-137	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi5g15970.1	288	2e-133
Arabidopsis v10	AT2G16850.1	278	2e-145	\| Symbols: PIP3B, PIP2;8 \| plasma membrane intrinsic protein 2;8 \| chr2:7301647-7303180 FORWARD LENGTH=278