barSeed - Barley Seed Development Database

Probe CUST_14485_PI390587928

Source Contig U35_19413

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14485_PI390587928	Hv_44K_v2	TGAGGATACTATGTCTTTCTTCGAAGTATGTGTATTTGGTGACCAACAACCATGGAAAGA	873	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4500.1	6161	2e-24	3588 - 3647	100	60 / 60	minus	ABC12367 ABC14071 ABC17631
MLOC	MLOC_4500.2	6029	2e-24	3456 - 3515	100	60 / 60	minus	ABC12367 ABC14071 ABC17631
MLOC	MLOC_4500.3	3716	2e-24	3356 - 3415	100	60 / 60	minus	ABC12367
MLOC	MLOC_4500.4	3939	2e-24	3212 - 3271	100	60 / 60	minus	ABC12367
MLOC	MLOC_4500.5	1055	2e-24	371 - 430	100	60 / 60	minus	None
JLOC1	JLOC1_2804.1	5536	8e-25	1861 - 1920	100	60 / 60	plus
Harvest21	ABC14072	1075	3e-25	987 - 1046	100	60 / 60	plus
Harvest35	U35_19413	962	3e-25	874 - 933	100	60 / 60	plus

Contig Sequence (962 bp)

>U35_19413 962 Hv_44K_v2
GCCTAATGTCGTCTCTTGTGCTCGCAGCGCTGCAAAAACAATGGGTAAACACTTTCCGTG
CCACTCTTTCCCGTCTGTGCATGATGATGACGCTGACGCCGTCATGCTGAAATCCTCCAA
TATGACAGGGAGTGGGCGACGATTCCTCTGTAGCGCCTGGCCATCAAAGGTGCTACAAGA
AAATAACACCATGCAAACACAAAAACTGAAGTTTGATCGGGTCGTAATGTCTACAAAAAT
ACTGGAAATTATAGAGCAGTTGAAACCTCTGTGTGCTATGGTCTCCACCATTCTCATTCT
AGAACTACTTGGCTCCACCCATATCCCCACTGCCCAAGACATTACGAACCGACCCAAAAC
CACACCAAATATTATAGAGCCTGCGTTGTATGGGAGGAATGACCTGAAAAAGAACATCAT
TGATGGCATCACACATGGTAAATATTGTACCAATGAACTCACCGTAGTTCCACTTGTTGG
TCCAGGAGGTATTGGGAAGACAACACTCACGCAACACATATTTAGAGAACTGGAGGGTTC
TTTCCAGGTCCCAGTTTGGATATGTGTATCTCTTGATTTTAACGCAGATAAGTTGGCAGA
AGAGATCGCGAAAAAGATACCTAAAGTGAATGATGAAAAAGCTAATGCTACAAATCACGA
GGTAATTGCACAAAGATTAAAATCTAAGCGGCTTCTACTTGTTTTAGATGATGTGTGGAC
ATACCATGAGGATGAGTGGAAAAAACTATTAGCTCCGTTAAATCAAACGGGGGGAGAGAA
GGGTAATGTGGTTATAGTCACTACACGGATTCCAAAGGTAGCAAGTATGGTAACCACAAC
CAATTCTTCAATTGACGTGGAACGTCTAACTCATGAGGATACTATGTCTTTCTTCGAAGT
ATGTGTATTTGGTGACCAACAACCATGGAAAGATCATCCGGAATTACGTGATGTTGGGAG
TA

Homology of Contig U35_19413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g29710.1	1525	8e-86	protein\|NBS-LRR disease resistance protein, putative, expressed
Brachypodium v1_2	Bradi2g36037.1	1563	4e-111
Arabidopsis v10	None