barSeed - Barley Seed Development Database

Probe CUST_1269_PI390587928

Source Contig U35_30953

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1269_PI390587928	Hv_44K_v2	AGCTTTCTCCCCGGTCTGAAACAAGCTGACGATCTTGTTTTGCAGGTGCTGGAGCTGGCC	348	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33483.1	1189	7e-23	1011 - 1070	98	59 / 60	minus	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869
MLOC	MLOC_33483.2	607	7e-23	429 - 488	98	59 / 60	minus	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869
Harvest21	ABC00648	951	3e-25	544 - 603	100	60 / 60	minus	ABC00648
Harvest35	U35_30953	568	3e-25	349 - 408	100	60 / 60	plus

Contig Sequence (568 bp)

>U35_30953 568 Hv_44K_v2
CCACAGCTCACCAACCCTCTCGCCGGAGTCTAGCGAAGCAAGCAAGCAAGCCAGGAAGAT
GGACGGCAGCAAGGCGAAGAAGGTGGCGGCGAAGAAGCTGGGCGGGCCGAGGAAGAAGTC
GGTGACCAAGTCCATCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGCATCGGCCGCTACCT
CAAGAAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGT
CCTCGAGTACCTCGCAGCCGAGGCAAGCCCCGCGACGCCGTCTTTCTCCCTTCCCTAGCT
CTCTTCCGACGAACCACCGCCCTTCTCTCCCTCTCTTTCTTCCGACGTAGCTTTCTCCCC
GGTCTGAAACAAGCTGACGATCTTGTTTTGCAGGTGCTGGAGCTGGCCGGCAACGCGGCC
AAGGACAACAAGAAGACCCGCATCGTGCCGAGGCACCTGCTGCTGGCCATCCGCAACGAC
CAGGAGCTCGGGAGGCTGCTCTCCGGCGTCACCATCGCCCACGGCGGCGTCATCCCCAAC
ATCAACCCGGTGCTGCTCCCCAAGAAGT

Homology of Contig U35_30953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None