barSeed - Barley Seed Development Database

Probe CUST_12396_PI390587928

Source Contig U35_47048

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12396_PI390587928	Hv_44K_v2	TTCTATTTTGGACATTCCGATTCGGTTACTTTACAGGTTCTTGCTTACACTGGGAATAAA	38	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372814	3841	2e-24	1931 - 1990	100	60 / 60	minus	ABC02387 ABC02395 ABC07309 ABC07310 ABC47834
MLOC	AK367370	2529	2e-24	1187 - 1246	100	60 / 60	plus	ABC02387 ABC02395 ABC47834
MLOC	MLOC_35411.3	1322	2e-24	235 - 294	100	60 / 60	minus	ABC02387 ABC02395 ABC06493 ABC47834
MLOC	MLOC_35411.1	1407	2e-24	236 - 295	100	60 / 60	minus	ABC02387 ABC02395 ABC06493 ABC47834
MLOC	MLOC_35411.2	1272	2e-24	236 - 295	100	60 / 60	minus	ABC02387 ABC02395 ABC06493 ABC47834
Harvest21	ABC47834	638	3e-25	39 - 98	100	60 / 60	minus	ABC47834
Harvest35	U35_47048	638	3e-25	39 - 98	100	60 / 60	minus

Contig Sequence (638 bp)

>U35_47048 638 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAGAAAAACTTCTTAGCTTCTTTATTCCCAGTGTAAGCAAGA
ACCTGTAAAGTAACCGAATCGGAATGTCCAAAATAGAAAGAGCATGGGAGAAGATTATTT
TTCTCAACATATGGAAAATAGTAGGTCTTGTGGTGACCACTAATTTAAAGGAGTGTAATA
CTGCTAACTATTAACAAGAGCTTAGTTGTGATTGTGCTATGCTACTGGTTTATATATATG
CTTGAACTTTACAGGACTTTCCCAGTTGTCCTCGACGAAACGGAAGTCGTGTTCACGAAC
ATTGATGCCTAACGCTGAAAGGCTGTGCAGGAAGAGGTCCTGCGACTGCGAGTTACCCGG
TCAGCCTTCAGAATCACCTGGAACTGGGTGTGGCGCTGGAGCCTGTTGGGGTTGTCGCCG
TAGGGGTTGTCGTCGGGCCTCACGCTCAGCTCCACATAGACGACGTTCCACGGCTAACGG
CCCAGCACTCGGATGAAGGTGAGGGGGTTCATCGTCCCGGCGCCGACCTGCTCGATGGAT
TGATTAGGAAAATCAAGAACTGTCATTACATCTATCAGCCATTGATTGATGCTGCTGCTG
GTGATTCTACATAGTTGGCGGATACAAGTAGGAGTAGA

Homology of Contig U35_47048 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None