barSeed - Barley Seed Development Database

Probe CUST_12285_PI390587928

Source Contig U35_3877

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12285_PI390587928	Hv_44K_v2	TTACGTCAAGAGAAGATTGATTATCGTGCAATTAAGGATATGGCTTGTGAGTACCAGCAG	1083	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248142.1	2674	2e-24	2239 - 2298	100	60 / 60	plus	ABC05504 ABC07976 ABC08667 ABC08668
MLOC	AK374941	3368	2e-24	3029 - 3088	100	60 / 60	plus	ABC05504 ABC07976 ABC08667 ABC08668
MLOC	MLOC_16299.7	2530	2e-24	80 - 139	100	60 / 60	minus	ABC05504 ABC08667
MLOC	MLOC_16299.6	2622	2e-24	80 - 139	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.10	2780	2e-24	70 - 129	100	60 / 60	minus	ABC05504 ABC08667
MLOC	MLOC_16299.9	1288	2e-24	70 - 129	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.15	2483	2e-24	62 - 121	100	60 / 60	minus	ABC05504 ABC08667
MLOC	MLOC_16299.14	2555	2e-24	62 - 121	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.13	1098	2e-24	62 - 121	100	60 / 60	minus	ABC08667 ABC08668
MLOC	MLOC_16299.2	1554	2e-24	115 - 174	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.3	1157	2e-24	115 - 174	100	60 / 60	minus	ABC05504 ABC08667
MLOC	MLOC_16299.4	2710	2e-24	115 - 174	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.8	1457	2e-24	80 - 139	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.1	1224	2e-24	115 - 174	100	60 / 60	minus	ABC08667 ABC08668
MLOC	MLOC_16299.11	1634	2e-24	65 - 124	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.12	2586	2e-24	65 - 124	100	60 / 60	minus	ABC05504 ABC08667
MLOC	MLOC_16299.5	2964	2e-24	115 - 174	100	60 / 60	minus	ABC05504 ABC08667 ABC08668
MLOC	MLOC_16299.16	1066	7e-23	1 - 57	100	57 / 57	minus	ABC08667 ABC08668
JLOC1	JLOC1_11222.12	1365	8e-25	1097 - 1156	100	60 / 60	plus
JLOC1	JLOC1_11222.11	964	8e-25	696 - 755	100	60 / 60	plus
JLOC1	JLOC1_11222.10	1162	8e-25	894 - 953	100	60 / 60	plus
JLOC1	JLOC1_11222.9	2711	8e-25	2443 - 2502	100	60 / 60	plus
JLOC1	JLOC1_11222.8	1439	8e-25	1171 - 1230	100	60 / 60	plus
JLOC1	JLOC1_11222.7	2634	8e-25	2366 - 2425	100	60 / 60	plus
JLOC1	JLOC1_11222.6	2837	8e-25	2569 - 2628	100	60 / 60	plus
JLOC1	JLOC1_11222.5	1228	8e-25	960 - 1019	100	60 / 60	plus
JLOC1	JLOC1_11222.4	1238	8e-25	970 - 1029	100	60 / 60	plus
JLOC1	JLOC1_11222.3	1061	8e-25	793 - 852	100	60 / 60	plus
JLOC1	JLOC1_11222.2	1585	8e-25	1317 - 1376	100	60 / 60	plus
JLOC1	JLOC1_11222.1	1867	8e-25	1599 - 1658	100	60 / 60	plus
Harvest21	ABC08667	1504	3e-25	362 - 421	100	60 / 60	minus	ABC08667
Harvest35	U35_3877	1504	3e-25	1084 - 1143	100	60 / 60	plus

Contig Sequence (1504 bp)

>U35_3877 1504 Hv_44K_v2
TCGCCTGGGNACACTGTATATTCATGTCATTTTCATGCAGACCTTCATGATCCCAGGGAC
AATATTCATGTCATTGCTTGCTGGTGCCCTATTCGGGCAACTCCGGGGCGTGGCTCTGGT
TGTCTTTGCTGCCTCTGCTGCGAGCCTATCAGAATCGAACTGATTGTCATCCGGCTTATT
TGCGATGAGGCAACGCAAAAGAATCGCAACTCTTGAGAGACCAGAGGACGAACATGCGTT
GCTTTGTATCAGATCTGAACCACACAGCATGCCGGACGTAGGTCTGGAGCACGATGCATA
CCATGCGGAGGAAATAACGTCGGAGCAGCTAATCACAGAGTACAAGCTAAGTATGATACT
GAATGTTGCTGATATGAGACTATAATTAACTGAATTCTGCCGTCAAGTGATTCAGGAACA
GGATGTCTAAGGGTCCAAATGCTAGACTTATTATACCTAGCAGGGTCCAAATGCTAGACT
TATTATACCTGATAAGAGATGTTTGCATGTATTGTTGGCATGTCGTTTGATTCAACACAA
GAAGCATAACAAAGTAAATCATCTTTTTTCTTGCGGACAATAGCTGAATAAATCTGCTCT
AGTCTGTAGCAGGTCTAGCAGTACAGTTCATATTAGGTTCCAAAAATTTCCAACTCAGGG
AAGGAGCAGACATGAGCTCAAATTGTTAATGGCATGCAGGAACAATTTCAACAATGTCAT
CACCAGTACGATATTGCCGTTTTGTGGAGGAAAAAATCCTTGGCCTTTGTTTATAAGTTT
GTACAACACAGTTAATATGGTTTGTTGCCATTTTGAACTCCTTTGTATTTTGCTCTGACA
GTATCTTCATGCACCATTCTTTGGTTGAACTATTAAATAGAAGCTTAGCTTTGTCATTAA
TGTTTTATTAGGTACTCAATATGCCAGAATAAATCTGGTTTGCATGAAGTTCTTTTAGGA
ACAACTGGGAGGAAACAAGGCACATCTTTAAAGGCACCATCCTTACCCTCCACCGAGTCA
TTTGTCTGCAAGATAAGATTGGCAGAGGCCTTCATATCACTTGAACATCCATTAGTCACA
AAATTACGTCAAGAGAAGATTGATTATCGTGCAATTAAGGATATGGCTTGTGAGTACCAG
CAGATGCTTAAGCTTCTTAGAAAGGCTCCATTTTTAGGCAGATGGCGTGCTAAGCCAAGA
TCCGTTGATTCGTTTATAGTTCCATGGTGATGACCAGATCTTGAGGTTCTATGCTCCGTC
GCAGAGGCTGGTTCTTGAAGTTTCTTGATTTCACCCCAATTTTAGCAGTTTTGTGTACCA
ACTCTTTTAGCTTATTTGTAGCATGTGTGCTTCTTCACAATACTGATGTTTTGAACAGTG
GTAGCCTATAACAAACCTATAAAGCCCTATGATATTTGGCACCATGAGGTGTTTATATGG
ATCGGTAACTCTGTAACTCTTATTATTTTAATTGTTGGAGAGGAAAACAAAAAAAAAAAA
AAAA

Homology of Contig U35_3877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None