barSeed - Barley Seed Development Database

Probe CUST_11843_PI390587928

Source Contig U35_48862

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11843_PI390587928	Hv_44K_v2	ATTGTGTCAGTCATGGCATTTACTATTGTTTGAAATGGATGAAAAGAAATGCCCCATCCG	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54031.1	2939	3e-22	1 - 56	100	56 / 56	minus	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
MLOC	MLOC_54031.2	1718	3e-21	1 - 54	100	54 / 54	minus	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
JLOC1	JLOC1_34760.1	2978	8e-25	2896 - 2955	100	60 / 60	plus
Harvest35	U35_48862	472	3e-25	23 - 82	100	60 / 60	minus

Contig Sequence (472 bp)

>U35_48862 472 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAACGGATGGGGCATTTCTTTTCATCCATTTCAAACAATAG
TAAATGCCATGACTGACACAATTCCAGTGGAAGCAAATCTGCTTTATTTATTCGGCTTAA
AGAGCAACTGCTGACATAGTACTGTCACAGACACACACTACACCAATCTCTCGACAAGTT
TCGTACGTGGCGAACGCCCTTTATTCATCCATGGTTGCCGATGGCTTAAATTAAATGGAA
ATGCTGTTGGGGATGCCCTTGGCGGTAAGCCCGGCAGCGGCGCCCTTGTGGTCGGAGGTG
TTGGGGTAAAGCAGCATGTAGGGAAACTTAGCCGGTCCGTTGCGGTTCTTGAGCTCCGGG
TCATGGTTCATGCCCACCACCTTGCTCTCGATCTCCACCAGCCGGTCGCTGAACCGCTTG
AACACCTCCAGGGCCTTTGGGTCCGAGGTCCACTCCGGCGTGTCCCGCTGCC

Homology of Contig U35_48862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None