barSeed - Barley Seed Development Database

Probe CUST_11287_PI390587928

Source Contig U35_23942

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11287_PI390587928	Hv_44K_v2	GTAGTAGTAGATTGTAGTAGGCATATTTGAGTTGTAGCAGTGTGAAGATTGTAATAGACT	729	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367609	3063	2e-24	2887 - 2946	100	60 / 60	plus	ABC15824 ABC15825 ABC18126 ABC20604
JLOC1	JLOC1_27426.1	331	8e-25	172 - 231	100	60 / 60	plus
Harvest21	ABC20604	873	3e-25	85 - 144	100	60 / 60	minus	ABC20604
Harvest35	U35_23942	873	3e-25	730 - 789	100	60 / 60	plus

Contig Sequence (873 bp)

>U35_23942 873 Hv_44K_v2
GGTTCGATTCCCCCCACGGAGCAGCCTCCGATGACCCCAACCACGGCCGCCGACCCCAAC
CACGGCCGGCGAGCAACCCTAGCACTGGTGGCGGCTGTCGGCGCCACCTCCCTCTCCTTT
CTGGCCGGGGATCCACCTCTCGGTTCCTCCTGACCCCAACCCCTCGCTCCCCCTCCCCAC
AAACACCTCCCTGTCTCGTCCTCCTTCCTTCCAGACCGCTGCCACCTTCCTCGCCTCCAA
TCCCCACCGCTGCTCAAGTCGCTCAAGGACGAACCGAACAAATCCCCACCGCCGCTCAAG
TCGATCGAAACCTTAGACTTCCCCACCGTCGGTCGGCGCTGCCACATCCCACGACCAGCC
CGCCGCCTCCATCCCTCGCCTGTGGCGATGTCTTCCCTGTTCCAGAGAAGCTTGCTCGAG
CGCCTCCACCACGTCGAGAAGGCGCTGGAGCTGGCGGGATCGGTCATGGGGGAGCTGGGA
AACTCGCAGGGTCCCCGCGCCGGGGTCGTCATCGACTGCTGCCGCGAGTTCATGCTCTGC
CGCGAGTTCTGTGCTCAGAGGTACAATGGGAGCAAGTTCATCCTCATCTGTAGCTACTAT
GCGACTGCCGCACTGCAGTCTCCATTCAGTTCCTAGAGCATCTAAATCTGTTATTATTGT
AGCTGGTGAAATGTGAAGCCAAGCGTGAAGTCGTGAAGCCTATATGCAAAGAGTAGCATA
TCATGTATTGTAGTAGTAGATTGTAGTAGGCATATTTGAGTTGTAGCAGTGTGAAGATTG
TAATAGACTAATTTAGTGTTTTTTTGGACGAATTTTATTTGTTCTGTGATCTATTCAAAA
TATTGATTTCGTATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None