barSeed - Barley Seed Development Database

Probe ABC20604

Source Contig ABC20604

barSeed

Links

Affymetrix Source Sequence (873 bp)

>ABC20604 873
GGTTCGATTCCCCCCACGGAGCAGCCTCCGATGACCCCAACCACGGCCGCCGACCCCAAC
CACGGCCGGCGAGCAACCCTAGCACTGGTGGCGGCTGTCGGCGCCACCTCCCTCTCCTTT
CTGGCCGGGGATCCACCTCTCGGTTCCTCCTGACCCCAACCCCTCGCTCCCCCTCCCCAC
AAACACCTCCCTGTCTCGTCCTCCTTCCTTCCAGACCGCTGCCACCTTCCTCGCCTCCAA
TCCCCACCGCTGCTCAAGTCGCTCAAGGACGAACCGAACAAATCCCCACCGCCGCTCAAG
TCGATCGAAACCTTAGACTTCCCCACCGTCGGTCGGCGCTGCCACATCCCACGACCAGCC
CGCCGCCTCCATCCCTCGCCTGTGGCGATGTCTTCCCTGTTCCAGAGAAGCTTGCTCGAG
CGCCTCCACCACGTCGAGAAGGCGCTGGAGCTGGCGGGATCGGTCATGGGGGAGCTGGGA
AACTCGCAGGGTCCCCGCGCCGGGGTCGTCATCGACTGCTGCCGCGAGTTCATGCTCTGC
CGCGAGTTCTGTGCTCAGAGGTACAATGGGAGCAAGTTCATCCTCATCTGTAGCTACTAT
GCGACTGCCGCACTGCAGTCTCCATTCAGTTCCTAGAGCATCTAAATCTGTTATTATTGT
AGCTGGTGAAATGTGAAGCCAAGCGTGAAGTCGTGAAGCCTATATGCAAAGAGTAGCATA
TCATGTATTGTAGTAGTAGATTGTAGTAGGCATATTTGAGTTGTAGCAGTGTGAAGATTG
TAATAGACTAATTTAGTGTTTTTTTGGACGAATTTTATTTGTTCTGTGATCTATTCAAAA
TATTGATTTCGTATGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_22235.4	981	0.0	187 - 864	98	666 / 678	None	ABC20604
AK367609	3063	2e-96	2822 - 3013	100	192 / 192	CUST_11287_PI390587928	ABC15824 ABC15825 ABC18126 ABC20604
MLOC_22235.1	2448	0.0	1759 - 2331	98	561 / 573	None	ABC20604
MLOC_22235.3	1994	0.0	1305 - 1877	98	561 / 573	None	ABC20604
MLOC_22235.2	1208	0.0	520 - 1091	98	560 / 572	None	ABC20604
MLOC_22235.5	1628	0.0	969 - 1540	98	560 / 572	None	ABC20604
MLOC_22234.1	2484	3e-58	1753 - 1875	100	123 / 123	None	ABC20604
MLOC_22234.2	1017	1e-116	181 - 408	100	228 / 228	None	ABC20604
MLOC_18268.1	670	1e-72	414 - 604	93	177 / 191	None	ABC15824 ABC15825 ABC18126 ABC20604
MLOC_52495.1	254	6e-71	31 - 221	92	177 / 192	None	ABC15824 ABC15825 ABC18126 ABC20604