barSeed - Barley Seed Development Database

Probe CUST_10881_PI390587928

Source Contig U35_14240

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10881_PI390587928	Hv_44K_v2	AGAATGTCAAGAATGCTGTCAAGAGTTGTGTGAAGACAGTGGCTAGGAAGACACTGAGCA	1214	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248841.1	2565	2e-24	1737 - 1796	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805
MLOC	MLOC_56386.1	1437	2e-24	368 - 427	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01805
MLOC	AK250100.1	2586	7e-23	1750 - 1809	98	59 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
MLOC	AK353809	2535	7e-23	1704 - 1763	98	59 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
MLOC	AK250690.1	2553	7e-23	1721 - 1780	98	59 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
MLOC	MLOC_62322.1	2157	7e-23	827 - 886	98	59 / 60	minus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
JLOC1	JLOC1_36461.1	1321	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_40780.1	2223	4e-23	890 - 949	98	59 / 60	minus
Harvest21	ABC01804	2041	3e-25	1215 - 1274	100	60 / 60	plus
Harvest21	ABC01799	2000	1e-23	1159 - 1218	98	59 / 60	plus	ABC01799
Harvest35	U35_14240	1781	3e-25	1215 - 1274	100	60 / 60	plus
Harvest35	U35_14239	2072	1e-23	1223 - 1282	98	59 / 60	plus

Contig Sequence (1781 bp)

>U35_14240 1781 Hv_44K_v2
GGGCGGCGCTCTGCAGAGGGAGCTCATCAGATTCCTTAACGCTGGAGCCTTCGGCACCGG
CACCGATGGCCACGTTCTGCCTGCCGCGACGACGAGGGCGGCGATGCTCGTCCGAGTCAA
TACCTTGCTGCAGGGATATTCAGGCATTCGCTTTGAGATCCTGGAGACAATTGCCACACT
TCTCAATGCCAACGTGACACCATGCCTGCCGCTCCGGGGCACGATCACCGCGTCCGGTGA
CCTCGTCCCGCTTTCCTATATTGCGGGCCTGGTAACCGGCCGCCCAAACTCGATGGCCAC
GGCTCCGGATGGCACGAAGGTTAACGCTGCAGAGGCATTTAAGATCGCCGGCATCCAGCA
CGGCTTCTTTGAGCTGCAGCCCAAGGAAGGCCTTGCCATGGTGAACGGCACGGCAGTGGG
CTCAGGGCTCGCATCAATGGTGCTTTTCGAGGCCAACATACTTAGCCTCCTTGCTGAGGT
CTTGTCGGCCGTCTTCTGTGAGGTCATGAACGGCAAGCCGGAGTACACCGACCACTTGAC
CCACAAGCTGAAGCATCACCCTGGGCAGATTGAAGCCGCCGCCATCATGGAGCATATACT
TGAGGGCAGCTCCTACATGATGCTTGCAAAGAAGCTCGGCGAGCTCGATCCATTGATGAA
GCCAAAGCAAGATAGGTATGCACTCCGCACGTCGCCGCAGTGGCTTGGCCCTCAGATTGA
GGTCATCCGTGCTGCCACCAAGTCGATCGAGCGGGAGATCAACTCAGTCAACGACAACCC
ACTCATCGATGTCTCCCGTGGCAAGGCCATCCATGGTGGCAATTTCCAGGGCACACCCAT
CGGTGTGTCCATGGACAACACCAGACTTGCCATTGCTGCGATTGGCAAGCTCATGTTTGC
CCAGTTCTCGGAGCTAGTGAACGACTTCTACAACAATGGTCTGCCTTCCAACCTCTCTGG
TGGACGCAACCCGAGCTTGGACTATGGCTTCAAGGGTGCCGAGATTGCCATGGCATCGTA
CTGCTCTGAGCTTCAATTCTTGGGGAACCCTGTGACCAACCATGTCCAGAGCGCGGAGCA
ACACAACCAAGATGTCAACTCTCTCGGTCTCATCTCCTCCAGGAAGACTGCCGAGGCTAT
TGACATATTGAAGCTCATGTCCTCGACATTCTTGGTTGCGTTGTGTCAAGCTATCGACCT
CCGTCACCTTGAGGAGAATGTCAAGAATGCTGTCAAGAGTTGTGTGAAGACAGTGGCTAG
GAAGACACTGAGCACCAACAGCAATGGCCATCTGCATAGCGCACGCTTCTGCGAGAAGGA
CCTTCTTCTCACAATCGACCGTGAGGTGGTGTTCGCCTACGCAGACGACCCTTGCAGCGC
CAACTACCCACTCATGCAGAAGATGCGTGCTGTTCTTGTGGAGCACGCCTTGGCCAATGG
TGAGGCCGAGCACGACGTGGAGACGTCAGTGTTTGCCAAGCTTGCCACGTTCGAGCAGGA
GCTCCGTGCAGTGCTGCCAAAGGAGGTCGAGGCCGCCAGGAGCGCCGTGGAGAATGGCAC
TGCAGCACAGCAAAACCGTATCTCCGAATGTCGGTCGTACCCGCTCTACCGGTTCGTGCG
CAAGGAGCTTGGAACGGAGTACTTGACTGGGGAGAAGACGCGGTCTCCTGGGGAAGAGGT
GGACAAGGTGTTCGTTGCCATGAACCAAGGCAAGCACATCGACGCGCTCCTTGAGTGCCT
GAAGGAGTGGAATGGTGAGCCCCTGCCTATCTGCTGAACAG

Homology of Contig U35_14240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g43800.1	715	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716
Arabidopsis v10	AT2G37040.1	725	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725