barSeed - Barley Seed Development Database

Probe CUST_10530_PI390587928

Source Contig U35_15261

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10530_PI390587928	Hv_44K_v2	TTGGTTCAGCTTTCACCTGAAACTGGTATGTCAGATTGATTATGATATTCTGCAAGTAAT	917	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248771.1	1028	2e-24	940 - 999	100	60 / 60	plus	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC	MLOC_74829.1	2764	2e-24	2667 - 2726	100	60 / 60	plus	ABC03168
JLOC1	JLOC1_49885.2	3125	8e-25	2515 - 2574	100	60 / 60	plus
JLOC1	JLOC1_49885.1	3131	8e-25	2521 - 2580	100	60 / 60	plus
Harvest21	ABC03168	1557	3e-25	918 - 977	100	60 / 60	plus	ABC03168
Harvest35	U35_15261	1003	3e-25	918 - 977	100	60 / 60	plus

Contig Sequence (1003 bp)

>U35_15261 1003 Hv_44K_v2
GTCGCTGTCGCCCATTACTGCTCCGTCGTCGTCCACAGCGACGCCAACGCTGCACCCAGC
CAGACCCCGCGAGATCCAGAGCCTAGCACTAGCTGGCCGGGGAGGAGGAAGGTCCAGGAC
CCGCGAGACAGGCAAGGGGATGGCGGGCAGCGGAGGCGGCGCCTACAGGGCGGAGGACGA
CTACGACTACCTCTTCAAGGCGGTGATCATCGGCGACTCCGGCGTCGGCAAGTCCAACCT
GCTCTCGCGCTTCACCAAGAACGAGTTCTGCCTCGAATCCAAGTCCACCATCGGGGTCGA
GTTCGCCACCCGCAGCCTCCAGGTCGACGGCAAGGTCGTCAAGGCCCAGATTTGGGACAC
CGCTGGCCAGGAGAGATACCGTGCTATTACGAGTGCCTATTATAGAGGAGCAGTAGGTGC
GTTGCTGGTGTATGATGTCACTCGCCGTGCTACATTCGACAATGTGGCGCGCTGGCTAAA
AGAGCTAAGAGATCATACTGACCCTAGCATTGTTGTCATGCTAGTTGGCAACAAATCTGA
CCTTCGCCACTTGGTGGCTGTTTCAACTGAAGATGGGCAGGAATATGCTGAGGCGGAGTC
ACTGTACTTCATGGAAACATCTGCATTAGACGCGACAAATGTAGACAACGCTTTCTCAGA
AGTTTTGACTCAGATATACCGTATTGCGAGCAGGAAGACGGTTGATGCAGGAGACGACGG
CTCATCTGCCCCAAGCAAAGGGGAGAATATAAATGTGAAAGACGACGTGTCTTCGCTGAA
GAGAGCCGGCTGCTGCTCAAGTTAGGGTATAGATGCATTATTATTTGTTACGTTTTCTAC
CAGTTGGTGTATCTTGTATTGCAACAAAACAGATTTACTGATTCTCTCATTTTGCTGCGG
TTATGGTGATGGTTAGGTTGGTTCAGCTTTCACCTGAAACTGGTATGTCAGATTGATTAT
GATATTCTGCAAGTAATTTGTTTACAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15261 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54590.1	222	4e-137	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g49900.1	223	8e-144
Arabidopsis v10	AT1G16920.1	216	3e-122	\| Symbols: RAB11, ATRABA1B, RABA1b \| RAB GTPase homolog A1B \| chr1:5787489-5789147 REVERSE LENGTH=216