barSeed - Barley Seed Development Database

Probe CUST_10042_PI390587928

Source Contig U35_36645

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10042_PI390587928	Hv_44K_v2	GGTGTCACCATCTTGTTGTCATCGGTAATTTAAATGAGAAATGTTGGATAATCTGTTCTT	587	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357111	1705	3e-22	1642 - 1700	98	59 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00179 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC12246 ABC14926 ABC31599 ABC32001 ABC32138 ABC47839
MLOC	MLOC_18282.1	712	3e-22	407 - 465	98	59 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839
JLOC1	JLOC1_12646.1	583	1e-22	406 - 464	98	59 / 60	plus
Harvest21	ABC00176	667	5e-23	592 - 650	98	59 / 60	plus	ABC00176
Harvest35	U35_36645	664	3e-25	588 - 647	100	60 / 60	plus
Harvest35	U35_14047	674	2e-21	601 - 656	98	56 / 57	plus

Contig Sequence (664 bp)

>U35_36645 664 Hv_44K_v2
GCTCAAGCCCCCGAGCCAGCGACCTCCTCCTCCCTAGTCGACCTCCCCGCGCACCGGCGA
CATGGCCCGCACCAAGCAGACGGCGAGGAAGTCCACCGGTGGCAAGGCGCCGAGGAAGCA
ACTGGCCACCAAGGCCGCCCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCA
CCGCTTCCGCCCCGGCACCGTCGCGCTCCGCGAGATCCGCAAGTACCAGAAGAGCACCGA
GCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAA
GACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCCTGCAGGAGGCCGCCGAGTCCTAC
CTCGTCGGCCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATC
ATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGAGAGAGGGCCTAGGCTGCTCTC
TGGAAGCTGTGGTCGTTTGTTAGGTCCATCATCTTAGCCTTTGTTCCGCGGTGGAAATGT
GCGTGCTAGTTTATGTTCGTGCCATGGTGGATGTAGTGTGCCTGTCTGGTGTCACCATCT
TGTTGTCATCGGTAATTTAAATGAGAAATGTTGGATAATCTGTTCTTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_36645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g34240.1	275	1e-58	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	4e-59
Arabidopsis v10	AT5G65360.1	136	4e-59	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136