barSeed - Barley Seed Development Database

Probe ABC49813

Source Contig ABC49813

barSeed

Links

Affymetrix Source Sequence (600 bp)

>ABC49813 600
GCTGCTGTTACTTCTGTGCTTTGTTGGGGTCAGAAGTTACTTTCTTGCTCTCTGGACAAG
ACTGTAAAGGCCTGGGCTGCTTCAGAATCTGGAGACCTTCAACTCATGCATACCCACTCT
GAGGAGCATGGTGTGCGCACCCTCTTTGGCATGCATCGTCCGGGAAAGACGCCGGTTCTG
TTGTGCTCCCTCCACAAGCGCAGCTGCGTCCGCCTGTTGGACCTGCCATCGTTCGAGGAG
ATGGGCACGCTCTCGTCCAAAACAGAAGTGAAGACCATCGAACTCGCCCAAGGGCCATCG
TGGCTGCTTTTCACCGGGGATGGCGCGGGCGAGCTCAAGGTGTGGACGTGGGCGTCCCAA
GACGAGGAGCTAGCCCCCAACACCGGCGCTGCCATAAACGTCTGCTAGGCATGCATAGTC
GATCATGCTCATGCATGCGCTGAGCTAGCTCCACCGTTGTGATGTCTACTACTTCCCCCC
TGCCCTTTCCTAAATAGATATTTAGAGATTCCAACATGGACTACATATGGAGCAAAATGA
ATGAATGTATACTTTAAAATAGGTCTATATACATCCTGTATGNAGGTATATATAAAATGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_44246.1	522	0.0	1 - 469	100	469 / 469	None	ABC49813
MLOC_44246.4	1822	3e-62	1640 - 1769	100	130 / 130	None	ABC49813
MLOC_44246.2	1323	1e-61	1142 - 1270	100	129 / 129	None	ABC49813
MLOC_44246.3	1739	3e-62	1557 - 1686	100	130 / 130	None	ABC49813
MLOC_44246.5	1243	1e-61	1073 - 1201	100	129 / 129	None	ABC49813
MLOC_44246.6	1209	1e-61	1039 - 1167	100	129 / 129	None	ABC49813
AK366092	2177	3e-57	1813 - 1942	98	127 / 130	CUST_14496_PI390587928	ABC04481 ABC15903 ABC15904 ABC49813
AK369855	3636	3e-57	1905 - 2034	98	127 / 130	CUST_14496_PI390587928	ABC04481 ABC15903 ABC15904 ABC49813
MLOC_28682.3	1589	3e-57	991 - 1120	98	127 / 130	CUST_36855_PI390587928 CUST_14496_PI390587928	ABC15903 ABC15904 ABC49813
MLOC_28682.7	1774	3e-57	1184 - 1313	98	127 / 130	CUST_36855_PI390587928 CUST_26571_PI390587928 CUST_14496_PI390587928	ABC15903 ABC15904 ABC49813
MLOC_28682.4	1672	3e-57	1074 - 1203	98	127 / 130	CUST_14496_PI390587928 CUST_26571_PI390587928 CUST_36855_PI390587928	ABC15903 ABC15904 ABC49813
MLOC_28682.6	1247	3e-57	1104 - 1233	98	127 / 130	CUST_14496_PI390587928	ABC15903 ABC15904 ABC49813
MLOC_28682.1	1439	3e-57	1189 - 1318	98	127 / 130	CUST_26571_PI390587928 CUST_36855_PI390587928 CUST_14496_PI390587928	ABC15903 ABC15904 ABC49813
MLOC_28682.5	1703	3e-57	1105 - 1234	98	127 / 130	CUST_36855_PI390587928 CUST_14496_PI390587928	ABC15903 ABC15904 ABC49813
MLOC_28682.2	1325	3e-57	1075 - 1204	98	127 / 130	CUST_26571_PI390587928 CUST_36855_PI390587928 CUST_14496_PI390587928	ABC15903 ABC15904 ABC49813