- Probe CUST_14496_PI390587928
- Source Contig U35_21722
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14496_PI390587928 | Hv_44K_v2 | GTTAAAGTTGCACACTGATTGCCAGATGGCCATATGTTTAATAGCAAGAAAAAAGAGTAA | 525 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.132 | 1.130 | 1.125 | 0.930 | 0.597 | 0.566 |
| Raw | 547.968 | 806.680 | 745.925 | 903.559 | 212.133 | 224.855 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_49101.1 | 659 | 7e-23 | 44 - 104 | 98 | 60 / 61 | plus | None |
| MLOC | MLOC_31479.2 | 498 | 7e-23 | 9 - 68 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_31479.1 | 653 | 7e-23 | 37 - 96 | 98 | 59 / 60 | plus | None |
| MLOC | AK366092 | 2177 | 3e-21 | 1104 - 1164 | 97 | 59 / 61 | plus | ABC04481 ABC15903 ABC15904 ABC49813 |
| MLOC | AK369855 | 3636 | 3e-21 | 1113 - 1173 | 97 | 59 / 61 | plus | ABC04481 ABC15903 ABC15904 ABC49813 |
| MLOC | MLOC_28682.3 | 1589 | 3e-21 | 397 - 457 | 97 | 59 / 61 | plus | ABC15903 ABC15904 ABC49813 |
| MLOC | MLOC_28682.7 | 1774 | 3e-21 | 393 - 453 | 97 | 59 / 61 | plus | ABC15903 ABC15904 ABC49813 |
| MLOC | MLOC_28682.4 | 1672 | 3e-21 | 397 - 457 | 97 | 59 / 61 | plus | ABC15903 ABC15904 ABC49813 |
| MLOC | MLOC_28682.6 | 1247 | 3e-21 | 396 - 456 | 97 | 59 / 61 | plus | ABC15903 ABC15904 ABC49813 |
| MLOC | MLOC_28682.1 | 1439 | 3e-21 | 398 - 458 | 97 | 59 / 61 | plus | ABC15903 ABC15904 ABC49813 |
| MLOC | MLOC_28682.5 | 1703 | 3e-21 | 397 - 457 | 97 | 59 / 61 | plus | ABC15903 ABC15904 ABC49813 |
| MLOC | MLOC_28682.2 | 1325 | 3e-21 | 398 - 458 | 97 | 59 / 61 | plus | ABC15903 ABC15904 ABC49813 |
| JLOC1 | JLOC1_31457.1 | 546 | 4e-23 | 45 - 105 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_20676.1 | 554 | 4e-23 | 37 - 96 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_19200.1 | 560 | 2e-21 | 398 - 458 | 97 | 59 / 61 | plus | |
| Harvest21 | ABC15904 | 527 | 1e-23 | 452 - 512 | 98 | 60 / 61 | plus | ABC15904 |
| Harvest21 | ABC15903 | 601 | 1e-23 | 16 - 75 | 98 | 59 / 60 | minus | ABC15903 |
| Harvest35 | U35_21722 | 600 | 3e-25 | 526 - 585 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19966 | 1389 | 6e-22 | 703 - 763 | 97 | 59 / 61 | minus |
Contig Sequence (600 bp)
>U35_21722 600 Hv_44K_v2 GACACAAGGAGGCTATTACTGGAATCTCTATGCCGATGGGGTCTGACAAGCTCTACTCTG GCAGTGCCGACGGGTCTGTTCGCGTATGGGACGGCAAATCTGGCAAGGTAGCTGGGCTAT CCGCTCTTGGCATTCCCCTCAGACTCGTTATGCTCAGTTCACCTTTGAGGTCATGTCTCT ATTGATTCCTGCATTACGTGTGGCGGTTGAGTTCTGCTGCCTGTTCAATTGGGGATTAAC TCTGGTTGCTTGAGGTGGTTGATGTGCCGATGGGCTCAAATTGTGCATCGTCTATGATGG TTGATGTGTGCTGACTGCTTGATCAACTGAGGAGCTCCTCTAATTCCTCAGTGCGCCTGA TGTACCCGTTGGTTCAGATCAGGTTGTCATTTGGCACGCCTGGGGTTGAGGACATGTCAG ATTGATTTGCTTGGAGGCTTTTCGCCTGTTTGTCGTGATCAGTGTACACCGGATCAGTTT CGGGAGGCGATCAGGCTGGTTACCTGATAGGCAAAGCTCTCTGCAGTTAAAGTTGCACAC TGATTGCCAGATGGCCATATGTTTAATAGCAAGAAAAAAGAGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_21722 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |