barSeed - Barley Seed Development Database

Probe ABC48864

Source Contig ABC48864

barSeed

barSeed Home
List Cluster Sets
List Cell Wall Probes

Links

James Hutton Institute Home
BioSS Home

Affymetrix Source Sequence (459 bp)

>ABC48864 459
GGCAGCACGAAGCATTGAGTATGAAGGTGATACCAAATGAAGAGACAGCACCACCTGCCG
GTCCGACTAGTCGCAAAAAGGGTGCCTCAGTTGCTCAAATCACTGCTTTGGATAAGCTTC
AATCACATGGTCCGGGTCGTAAAGAAAAAACTGCTTGGAATTGCCAATCTGGAATTGCCA
ACCCAAATTCAGCTGTTTGGGGTGGTATAGGATTTGGGCTAGGGAAAATTGGCCCAATTC
CTAGCGAGTCAGCTGCGCACCTCCCCCGCTCCCTGCTCGTGAAAATTTTCGGAGCTCACG
AGCCTGGAAAGGCTCGGAAACGTCCGCTCCCTCCTCTCCCTCCCGTCCGCGCACCTCCCC
CGTGGCGGCTACTCCGGCGACGGCGACTCTGGTAGATCCGCTCCCTCCTCTCCACAAGAG
TTGGTTGCCTACATTACCAAGGAGAACANAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_97.1	2246	9e-151	384 - 701	97	307 / 318	CUST_21860_PI390587928	ABC48864
MLOC_2153.1	1860	3e-125	1127 - 1417	95	275 / 291	CUST_21860_PI390587928	ABC48864
AK250505.1	1727	1e-69	1259 - 1401	100	143 / 143	CUST_23121_PI390587928	ABC19031 ABC48864
AK366711	2015	1e-59	1369 - 1511	96	137 / 143	None	ABC19031 ABC48864