barSeed - Barley Seed Development Database

Probe CUST_21860_PI390587928

Source Contig U35_47640

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21860_PI390587928	Hv_44K_v2	AAATTCAGCTGTTTGGGGTGGTATAGGATTTGGGCTAGGGAAAATTGGCCCAATTCCTAG	184	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.190	1.495	1.472	1.060	0.551	0.422
Raw	33.590	66.744	57.918	66.421	11.639	9.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2153.1	1860	2e-23	1144 - 1201	100	58 / 58	plus	ABC48864
MLOC	MLOC_97.1	2246	7e-23	601 - 657	100	57 / 57	minus	ABC48864
JLOC1	JLOC1_1298.2	1875	1e-23	1158 - 1215	100	58 / 58	plus
JLOC1	JLOC1_1298.1	1479	1e-23	1158 - 1215	100	58 / 58	plus
Harvest21	ABC48864	459	3e-25	185 - 244	100	60 / 60	plus	ABC48864
Harvest35	U35_47640	459	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_47640 459 Hv_44K_v2
GGCAGCACGAAGCATTGAGTATGAAGGTGATACCAAATGAAGAGACAGCACCACCTGCCG
GTCCGACTAGTCGCAAAAAGGGTGCCTCAGTTGCTCAAATCACTGCTTTGGATAAGCTTC
AATCACATGGTCCGGGTCGTAAAGAAAAAACTGCTTGGAATTGCCAATCTGGAATTGCCA
ACCCAAATTCAGCTGTTTGGGGTGGTATAGGATTTGGGCTAGGGAAAATTGGCCCAATTC
CTAGCGAGTCAGCTGCGCACCTCCCCCGCTCCCTGCTCGTGAAAATTTTCGGAGCTCACG
AGCCTGGAAAGGCTCGGAAACGTCCGCTCCCTCCTCTCCCTCCCGTCCGCGCACCTCCCC
CGTGGCGGCTACTCCGGCGACGGCGACTCTGGTAGATCCGCTCCCTCCTCTCCACAAGAG
TTGGTTGCCTACATTACCAAGGAGAACANAAAAAAAAAA

Homology of Contig U35_47640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None