barSeed - Barley Seed Development Database

Probe ABC42958

Source Contig ABC42958

barSeed

Links

Affymetrix Source Sequence (618 bp)

>ABC42958 618
CAATGAGGGGGAGGTAGGCGCTGCAGTGGCGATGTTCAAGAGGATGCCGGAGGTGCCAAG
GCCCAATGGGAAAGGCGTGTCGCCCAACTTCGAGACCTACATCATCCTGATCGAGGCGCT
GGTCAAAAACAACGCGTTTGTCACTGCACTCCAACAAGTGGGCGCCGCCGTTCCAGGCTG
TCAAGGATCTGATCTAAGGGCTGGTCAAGAGCAGGAAGGTGAAGCATGCCAAGGAGCTCG
GCATGGCAATGAAGAATTCTGCCAAGGGTGATGCCAAGGAGGAGTGGGAGAAGGTCGAGG
CGGACGCCTTCCAGCTCGCACTCGCCGAGATGAAAGCGTAACTCAATGCCTGCTTGGGAC
AGTATGTTGTTGCCTGTAAGCGGGTGATAAGTCATTGTTTTCTTCTTTCACTTGAAATCT
ACCTGACGTTCGTGTTTCTTCATGTGCTTGTGGCCGCCTGACTCTAGCAGTTACTAGCAG
TTCCTTCGGTTCAGGACATAAGATAGATCTTTTCTCATATAAGGTATTTGCATTTCAAAC
TACTGGGAGCTCTGCTGTCGCCTCGCTTGTAGGTGGGCTTTAAACTTCAGTTACTAGATG
CAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356073	1765	0.0	959 - 1573	89	559 / 625	CUST_36707_PI390587928 CUST_27644_PI390587928	ABC14419 ABC42958
MLOC_7174.2	1428	0.0	302 - 916	89	559 / 625	CUST_27644_PI390587928	ABC14419 ABC42958
MLOC_7174.3	974	1e-180	1 - 543	88	489 / 553	None	ABC14419 ABC42958
MLOC_78666.1	1089	4e-180	1 - 384	96	370 / 384	CUST_29776_PI390587928	ABC14419 ABC42958
MLOC_7174.1	1084	7e-178	38 - 574	88	483 / 547	None	ABC14419 ABC42958
MLOC_45881.1	426	2e-163	3 - 426	91	400 / 439	None	ABC14419 ABC42958