- Probe CUST_29776_PI390587928
- Source Contig U35_47850
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29776_PI390587928 | Hv_44K_v2 | AGCTCTCCATCGAGCCGGGCCTCGTATCCCACAACGTGCTCCTCAAGTGCATGGTTGCCA | 322 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.047 | 0.821 | 2.516 | 1.890 | 0.625 | 0.542 |
| Raw | 28.219 | 34.767 | 92.774 | 106.708 | 12.975 | 11.867 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45750.1 | 408 | 2e-24 | 56 - 115 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_49570.1 | 392 | 7e-23 | 66 - 125 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_78666.1 | 1089 | 3e-21 | 704 - 763 | 97 | 58 / 60 | minus | ABC14419 ABC42958 |
| Harvest21 | ABC49351 | 398 | 3e-25 | 323 - 382 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47850 | 398 | 3e-25 | 323 - 382 | 100 | 60 / 60 | plus |
Contig Sequence (398 bp)
>U35_47850 398 Hv_44K_v2 GGGATCCCCCACACGCCCTTCCTCGGCGACTGCTCCATCTTCTCCCTCGCCGTTTCCCGC CTCACCGCCGCCGCCCACCCCGACCTCGTCTCCTCCGTGCTCTCCGCCTCCCTCACTGCC CTCCCGGCGTCGCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTCGCTCTACGCCTCC GCCGGCATGCTCACCCATTCCCTCTTCACCTTCCACCTCGTTGTGTCCCCCTCCGATCGC GCCCTCTCAGCGCTCCTCGCTGCCTACTACGACACTGGCCAACTCGCCCGCGCCATCCAG GCCTTCCGCGACCTCTCAGCGGAGCTCTCCATCGAGCCGGGCCTCGTATCCCACAACGTG CTCCTCAAGTGCATGGTTGCCACGGNGGACGTCGCCGG
Homology of Contig U35_47850 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |