barSeed - Barley Seed Development Database

Probe CUST_27644_PI390587928

Source Contig U35_19536

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27644_PI390587928	Hv_44K_v2	AAGTCCTGTATGTTGCCTTTGTACTGCTCATTTAAAGGATTGAATCAATCGATTGTTTGA	890	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.855	1.467	1.202	0.774	0.193	0.184
Raw	1170.020	1473.143	1038.634	1067.458	91.879	96.391

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356073	1765	2e-24	1700 - 1759	100	60 / 60	plus	ABC14419 ABC42958
MLOC	MLOC_7174.2	1428	2e-24	116 - 175	100	60 / 60	minus	ABC14419 ABC42958
JLOC1	JLOC1_4732.1	1350	8e-25	37 - 96	100	60 / 60	minus
Harvest21	ABC14419	973	3e-25	891 - 950	100	60 / 60	plus	ABC14419
Harvest35	U35_19536	973	3e-25	891 - 950	100	60 / 60	plus

Contig Sequence (973 bp)

>U35_19536 973 Hv_44K_v2
AAGCCCAACGTCACAACCTACAAGCTCCGGATGTCCGGCCTGTGCGCCAAGGGCAGGAGC
TTCGAGGCAGAGGAACTGCTGGAGGCCATGGGCGCCAACGGCGTCCCGCCTAACCGGGAG
TGCTTCAACACCGTCATCGGCGGGCTCTGCAAGGAGGGGGAGGTGGGCGCTGCCGTGGCG
CTGTTCAAGAGGATGCCGGAGGTGCCCAGGCCCAATGGCAAAGGCGTGTCGCCCAACTTC
GAGACCTACATCATGCTGATCGAGGCGCTGGTCGAAAACAACGCGTTCGTCCCTGCGCTG
GAGGTGTGCAAGGAGTGCCTGGCCAACAAGTGGGCGCCGCCGTTCCAGGCTGTCAAGGGT
CTGATCCAAGGGCTGGTCAAGAGCAGGAAGGTGAAGCATGCCAAGGAGCTCGGCATGGCG
ATGAAGAAGGCTGCCAAGGGTGATGCCAAGGAGGAGTGGGAGAAGGTCGAGGCGGATGCC
TTCCAGCTCGCGCTCGCCGAGATGAAAGCGTAACTCACTTTCCGCTTGGGACAGTATGTT
GTCGCCTGTAAGCGGGTGATAAGTTATTGTTTTCTTCTTTCACTTGAAATGTATTAGACA
TCCGTGTTACTTCATGTGCTTGTGGCCGCCTGACTCTAGCAGTTCCTTCGGTTCAGGACA
CAAGATAGATCTTTTCTCATATAAGGTATTTGCATTTCGAACTACTGGGAGCTCTGCTGT
CGCCTCGCCTGTAGGTGGGCTTTAAACTTCAGTTACTAGATGCAGTTTGTACCACTTCTT
TATTTTCACAATTCATCTCTTGGTGCTTTAGATATTGTTTCTCTGTGTAACTTTGGAGCA
CTGTGGCACCTTTTGAACCCGTAGATTTGAACGATCCAAGCACTATAGAGAAGTCCTGTA
TGTTGCCTTTGTACTGCTCATTTAAAGGATTGAATCAATCGATTGTTTGATTTCATAAAA
AAAAAAAAAAAAA

Homology of Contig U35_19536 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58300.1	424	9e-66	protein\|expressed protein
Brachypodium v1_2	Bradi3g60510.1	424	4e-78
Arabidopsis v10	None