barSeed - Barley Seed Development Database

Probe ABC35377

Source Contig ABC35377

barSeed

barSeed Home
List Cluster Sets
List Cell Wall Probes

Links

James Hutton Institute Home
BioSS Home

Affymetrix Source Sequence (312 bp)

>ABC35377 312
TTCCCCCATCCTCACACATATATTGCGTCCTGCATTTCCGGAGTGTGGCCTCGGTTTGGT
GGTTCCTTTGGTGATTANGAACTTGTGTTTTAGAAAATACTCAGGTTGTTATAGTTGTGG
GACAGTTAATAAGCGCAGTGGTGTGCATGGTTGAGAAACGCGGTAGTGACTATAGGAGGA
CTGATGTGTTGCCACGACCTTTGTAATATGAGACTTGGATACTTTACACGGTTTCTGATG
TTTGTATTACTGTTTAATTATAAATTGTCAATGTTTAGTTGCTTACGTTTGTCATAAAAA
AAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_56293.2	2456	6e-141	2116 - 2409	97	287 / 295	CUST_12199_PI390587928 CUST_30751_PI390587928	ABC03042 ABC03043 ABC35377
MLOC_56293.3	2934	6e-141	23 - 316	97	287 / 295	CUST_12199_PI390587928 CUST_30751_PI390587928	ABC03042 ABC03043 ABC35377
MLOC_56293.1	3214	6e-141	54 - 347	97	287 / 295	CUST_12199_PI390587928 CUST_30751_PI390587928	ABC03042 ABC03043 ABC35377
MLOC_56293.4	2134	3e-99	1 - 219	96	212 / 220	CUST_30751_PI390587928	ABC03042 ABC03043 ABC35377