barSeed - Barley Seed Development Database

Probe ABC03042

Source Contig ABC03042

barSeed

Links

Affymetrix Source Sequence (838 bp)

>ABC03042 838
CTAACCTTCTTCTGCTTAGGGAACAGGGAGGTGAAGAGGAGTGGGGAGTATGAACCCGCT
GATCGTCCATTGCCTGGGTCAGCCTATGAAAGGGCACAAAACGCTCGGCGGTTCATGATC
TATGTTCACTCCAAGATGATGATAGTTGATGACGAGTACATCATCGTCGGATCTGCCAAC
ATCAACCAGCGGTCAATGGACGGGGGGAGGGACTCCGAGATTGCCATGGGCGCATTCCAG
CCACACCACCTGAACGCCAAAGGCCAGGTTGCCAGAGGGCAGGTCCATGGCTTCCGGATG
TCGCTGTGGTATGAGCACCTTGGAATGCTGCACAACGATTTCGTCAGCCCGGGAAGCCTG
GAGTGTGTCCAGAGGGTGAACAAGATGGCTGACAAGTACTGGGACCTCTATGCTAGTGAT
GAACTGAACGACGACCTCCCTGGGCACCTTCTCACCTACCCGGTTGCCGTGACAAAGGAC
GGCACGGTGACGGAGCTGCCCGGTGCGAGGTGCTTCCCCGACACGCAGGCTCCGGTGCTT
GGAATCAAATCCAAACACCTGCCCCCTATTCTCACCACATAGGATGCATTTGCATAGTTG
CAACCTCGGCAATGCTAGATGATGCTTCTAGCTAGATATGATGCGCTTCCCGCACTGTAA
GCTTATTCTATTGTTGCTACCTCTATATGATGGTTCTAGTCAGAGTCTATAGCTGATCGT
CTTACCTAAAGCCTGAACATTCTGCTGGCTAGCCTTGGTCTGTCTTGCAAGATGCATACT
TGAGAGTACTGAAGCTTGAAGATTTGGCAATGCTTCATCTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356633	3020	0.0	1978 - 2796	100	819 / 819	CUST_30738_PI390587928 CUST_23348_PI390587928	ABC03042 ABC03043
MLOC_71259.1	1497	0.0	1 - 763	100	763 / 763	CUST_23348_PI390587928	ABC03042 ABC03043
AK371039	2557	0.0	1759 - 2346	89	522 / 588	None	ABC03042
MLOC_57092.1	2577	0.0	1 - 576	89	510 / 576	None	ABC03042
MLOC_56293.2	2456	4e-87	1563 - 2135	77	453 / 586	CUST_30751_PI390587928 CUST_12199_PI390587928	ABC03042 ABC03043 ABC35377
MLOC_56293.4	2134	4e-87	200 - 772	77	453 / 586	CUST_30751_PI390587928	ABC03042 ABC03043 ABC35377
MLOC_56293.3	2934	4e-87	297 - 869	77	453 / 586	CUST_30751_PI390587928 CUST_12199_PI390587928	ABC03042 ABC03043 ABC35377
MLOC_56293.1	3214	4e-87	328 - 900	77	453 / 586	CUST_30751_PI390587928 CUST_12199_PI390587928	ABC03042 ABC03043 ABC35377