- Probe CUST_12199_PI390587928
- Source Contig U35_47155
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12199_PI390587928 | Hv_44K_v2 | CCACGACCTTTGTAATATGAGACTTGGATACTTTACACGGTTTCTGATGTTTGTATTACT | 21 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.738 | 4.189 | 1.169 | 0.738 | 0.268 | 0.294 |
| Raw | 1562.477 | 2311.208 | 528.519 | 520.529 | 69.842 | 82.541 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56293.2 | 2456 | 2e-24 | 2305 - 2364 | 100 | 60 / 60 | plus | ABC03042 ABC03043 ABC35377 |
| MLOC | MLOC_56293.3 | 2934 | 2e-24 | 68 - 127 | 100 | 60 / 60 | minus | ABC03042 ABC03043 ABC35377 |
| MLOC | MLOC_56293.1 | 3214 | 2e-24 | 99 - 158 | 100 | 60 / 60 | minus | ABC03042 ABC03043 ABC35377 |
| JLOC1 | JLOC1_36395.2 | 3212 | 8e-25 | 2957 - 3016 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36395.1 | 3361 | 8e-25 | 3106 - 3165 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC35377 | 312 | 3e-25 | 192 - 251 | 100 | 60 / 60 | plus | ABC35377 |
| Harvest21 | ABC03043 | 2885 | 3e-25 | 2724 - 2783 | 100 | 60 / 60 | plus | ABC03043 |
| Harvest35 | U35_47155 | 679 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14127 | 2885 | 3e-25 | 2724 - 2783 | 100 | 60 / 60 | plus |
Contig Sequence (679 bp)
>U35_47155 679 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAACAGTAATACAAACATCAGAAACCGTGTAAAGTATCCAAGT CTCATATTACAAAGGTCGTGGCAACACATCAGTCCTCCTATAGTCACTACCGCGTTTCTC AACCATGCACACCACTGCGCTTATTAACTGTCCCACAACTATAACAACCTGCTATTTTCT GAAACACAAGTTCTGAATCACCAAAGGAACCACCAAACCGAGGCCACACACCGGAAATGC AGGACGCAATCTATGTGGTGAGGATGGGGGGAAGGTAGTCCGACTTGGTGATGGAAGCAG TCCCAAAGTTAGGCTGGTGGAAGTCATCATGGTGGACAGTGTCAAGTGTCCTAAACAAGG AGTGGTACTGAGTGTCATATCTTCCGTCGCAGAGGTCAATGCCACCAACGAAGCTGAGTA TCCTCCTTTGCTCGGAGCCCTCGCTTGGCAATGCATCGTCAACACATACTATCTTCTGAT GGTGCGTGAACATGGTTGAGATCTGCAGATCCTGAACAATGCTGCCTGAATCATCGGGGT TACGAGGGCACAGAACACAGTGCACGTCCGTGCCTTGAAAGTAATTTGCAGTCTCCTCGT CATGGGTGGCCATCAAGCCATCTCTCTTCAGCAAGCTAACAGAAGTTCTATCATCCCACA CTAGCATAGGGACCCGGAC
Homology of Contig U35_47155 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g07760.2 | 813 | 1e-73 | protein|phospholipase D, putative, expressed |
| Brachypodium v1_2 | Bradi2g04480.1 | 812 | 5e-81 | |
| Arabidopsis v10 | AT3G15730.1 | 810 | 1e-69 | | Symbols: PLDALPHA1, PLD | phospholipase D alpha 1 | chr3:5330835-5333474 FORWARD LENGTH=810 |