barSeed - Barley Seed Development Database

Probe ABC30604

Source Contig ABC30604

barSeed

Links

Affymetrix Source Sequence (550 bp)

>ABC30604 550
GCAAAATCCGTTAGCATGAATGATCTTGAGTATGCCAAGGACCGGATCATGATGGGTAGT
GAGCGCAAGTCAGCAGTTATCTCTGATGAGTGCAGGAAACTGACAGCATACCATGAAGGA
GGGCATGCCCTTGTTGCCATGCACACTGATGGTGCGCACCCTGTCCACAAAGCTACCATC
GTGCCCAGGGGGATGGCCCTTGGGATGGTGGCTCAACTCCCTGACAAAGACGAGACTAGT
GTGTCAAGGAAACAGATGCTAGCAAGATTGGATGTGTGCATGGGAGGACGGGTGGCAGAG
GAGCTTATATCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCACTCAAGCGCCA
GGGGCGCACCCTCTACGGCTTCGGAGGCTAGGCCACCAACCAGATTTAGAGAGTTCTAGG
GTTCGTGGTCGTTGGTGTAATGGCAGCATCTCGCTGTTGTTTGCTGTCTTCTGTAGAATC
GAACGGAATCGAATGGAAATTGGTGTGGATTATGCCTGAATTTTTCAGCGGTCAAAAAAA
AAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250178.1	2694	2e-162	1572 - 1881	100	310 / 310	CUST_24830_PI390587928	ABC06621 ABC30604
MLOC_72104.2	1853	2e-162	1352 - 1661	100	310 / 310	CUST_24830_PI390587928	ABC06621 ABC30604
MLOC_72104.3	1768	2e-162	1057 - 1366	100	310 / 310	CUST_24830_PI390587928	ABC06621 ABC30604
MLOC_72104.1	2137	2e-162	1425 - 1734	100	310 / 310	CUST_24830_PI390587928	ABC06621 ABC30604
MLOC_11898.1	439	5e-114	197 - 419	100	223 / 223	CUST_40120_PI390587928 CUST_7845_PI390587928	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
MLOC_11897.3	1729	5e-114	1487 - 1709	100	223 / 223	CUST_7845_PI390587928 CUST_40120_PI390587928 CUST_37335_PI390587928	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
MLOC_11897.4	1733	5e-114	1491 - 1713	100	223 / 223	CUST_7845_PI390587928 CUST_40120_PI390587928 CUST_37335_PI390587928	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
MLOC_18952.1	374	1e-90	96 - 319	94	211 / 225	CUST_9586_PI390587928	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC30604 ABC30671 ABC32179 ABC37444
AK372135	1641	1e-76	1443 - 1641	93	186 / 200	None	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC18878 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC37444 ABC43349
AK372202	3795	3e-76	1942 - 2131	94	180 / 192	CUST_40123_PI390587928 CUST_11235_PI390587928	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC11710 ABC12636 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC37444 ABC43349
AK248915.1	492	3e-76	289 - 478	94	180 / 192	CUST_40123_PI390587928	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC37444 ABC43349
MLOC_18964.2	815	3e-76	34 - 223	94	180 / 192	CUST_40123_PI390587928 CUST_2510_PI390587928	ABC00026 ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
MLOC_18964.1	615	3e-76	34 - 223	94	180 / 192	CUST_2510_PI390587928 CUST_40123_PI390587928	ABC00026 ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
AK355345	503	8e-68	295 - 486	91	176 / 193	CUST_5180_PI390587928	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC43349
MLOC_79606.2	817	3e-66	28 - 219	91	175 / 193	CUST_5180_PI390587928	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
MLOC_79606.1	551	3e-66	28 - 219	91	175 / 193	CUST_5180_PI390587928	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444