barSeed - Barley Seed Development Database

Probe CUST_9586_PI390587928

Source Contig U35_13883

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9586_PI390587928	Hv_44K_v2	GCTGTCTTCTATAGAATCTAATGGAATCGAATGGAAATTGGTGTGGATTATGCCTAAAAA	449	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.548	0.792	0.965	1.037	1.204	1.488
Raw	24728.300	56476.167	59988.033	92433.167	39943.933	55101.833

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18952.1	374	9e-22	112 - 166	100	55 / 55	minus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC30604 ABC30671 ABC32179 ABC37444
JLOC1	JLOC1_13130.1	327	5e-22	65 - 119	100	55 / 55	minus
Harvest35	U35_13883	522	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (522 bp)

>U35_13883 522 Hv_44K_v2
GCACGAGGGCAGCAACCCACCTCCAAAGACATATTCACCGGAGAGAAGAAGAGAGAAGCG
AGAAGATGTCGGGCCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCC
ACCGGAAGGTGCTCCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGTCTCG
CGCGCAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGC
TCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCC
GCAAGACCGTCACCGCCATGGACGTCGTCTACGCACTCAAGCGCCAGGGACGCACCCTCT
ACGGCTTCGGAGGCTAGGCCGTCAACCAGATTTAGATTGTTCTAGGGTCGACTGCTCGTT
GATGTAATCGCAGCATCTCGCTGTTGTTTGCTGTCTTCTATAGAATCTAATGGAATCGAA
TGGAAATTGGTGTGGATTATGCCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39410.1	104	9e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g19360.1	104	4e-51
Arabidopsis v10	AT5G59970.1	103	4e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103