barSeed - Barley Seed Development Database

Probe ABC12636

Source Contig ABC12636

barSeed

Links

Affymetrix Source Sequence (1346 bp)

>ABC12636 1346
ACTCCCCTCTGCCGTCTGCTCCCAAGACCCCACTCTCCTCCTCCACCGCCGCCGCCGCCG
CCGCAGCCGCCGTGCGAATCTATCTCGAGGGAGGGGGAGATGGCGGACGCACTGGACATG
TCCCTCGACGACCTCATCTCCAAGAACAAGTCCTCCTCCCAGCGCGGCCGCGGCCGCCGC
AACCAGGCCTCGGGCTCGGGCTCGGGCTCGGGCTCGGGCTCGGCGCCCGGAGGACCCGCA
CCCGCCGGCCGCCGCTTCCAGGCTCGCGCCGCCACCCGCGCTGCCGCCGCGCCCTACCAC
CAATTCAACTTCCAGCACCAGCCGCCGCCGGCTGCTTTAGCATATGCTGCCCAGCAGGCC
CATGCCTATGCCCATGCCCAGACGATGGCCTTGGTGGCGCCGCCGTCCGGGGTCGAAACG
GGCACCAAGCTATACATCTCCAACCTCGACTACAACGTCTCCAACGAGGACATCAAGGAA
CTCTTTGCTGAGGTGGGCGATCTCAAGCGGTACTCCATTAACTACGACAAGAGTGGAAGG
TCAAAGGGTACTGCAGAGGTTATATTTTCAAGGAAATCGGATGCTCTAGCTGCTCTAAAG
AGGTACAACAATGTGCAGCTTGACGGCAAACCCATGAAAATTGAGGTCATTGGAACAAAT
ATTGAGGCGCCACCAGCACCTGCTATTTTTACTTTGAATACCCCAACGATAGGAAACTTC
AATATTCCTTCCTACAGTGGACGTGGAAGGGGTGGTGATAGTGGTCGAGGATGGCCTCGG
GGCAGAGGTGGATTCGGCGGGCGTGGTGCTGTTGGGCGTGGTCGAGGACGAGGTGATGTT
GGTCGTGGGCGAGGGAGGGGAGGGCGTGGCAGCCAGCCAGTTTTTGCCAATGATCTAGAC
GCAGACTTGGACAAGTACCACTCAGAGGCGATGCAGACCAGCTAAATGGCTTCGGCCCTG
CCGCGCCTGCATCCCGCACAGCCATTAGCTTTGTGTAGGACTAGATGCGGTCATGTGTTT
TATTACTCCATCCATTCCTAAATATAAGTCTTTCTAGAGATTTCACTAAGTGACTACATA
CGAAGCAAAATGAATGAATCTACGCTCTTACATCCATATGTAGTCCCCTAGTGTAATCTT
TAAAAAGACTTGTATTTAGGAACGGAGAGAGTAGATTGTAATTTGTGAGACAAATGAAGC
GTCTGTCTTTGTTGTTTGATGATCAAGGTGGTGCGTTCCATTGTAACTCTAGTTTCTGTT
CCTCTGACTTGTAGCAGCTGAGACGGTTGGACTAAGATGACATTTTTATAAAGGGTGATC
ACAAGTGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK372202	3795	0.0	2465 - 3795	99	1324 / 1332	CUST_11235_PI390587928 CUST_40123_PI390587928	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC11710 ABC12636 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC37444 ABC43349
MLOC_3945.2	773	0.0	1 - 773	99	772 / 773	None	ABC12636
MLOC_3945.1	546	0.0	1 - 543	99	542 / 543	None	ABC12636
MLOC_56864.2	1126	2e-107	211 - 785	79	465 / 586	CUST_39008_PI390587928 CUST_29837_PI390587928	ABC12636 ABC28988
MLOC_56864.1	1358	2e-107	430 - 1004	79	465 / 586	CUST_39008_PI390587928 CUST_29837_PI390587928	ABC12636 ABC28988
MLOC_3944.2	2222	1e-54	2106 - 2222	100	117 / 117	CUST_11235_PI390587928	ABC12636