barSeed - Barley Seed Development Database

Probe ABC26240

Source Contig ABC26240

barSeed

Links

Affymetrix Source Sequence (762 bp)

>ABC26240 762
GTCTACAGAAAGGAGCTTGATAGGCTGATTAGGCGGCCGGCGTGCTCGCTTGGGGCGTCG
GACCAAGCACGGCAGCATCGGCGGCACCGTCGTGGGTCTGGTGTCGATGCTCACCACCAG
CACTGGCTGCAAGATGGTCGCGTTGCTCGGGCGCCACAGCGGCAGCATCCTCCGGCTGCA
AGATGGTCGCGCTGCTCAGGTGGCACAACAGAAGGAGGGCCCGGGCGCCGCCGGCGTTCC
TCATTATACTGCCCGTGCTGGCGGGTGCGCTGCACACGGAGGTGGTCGCGTGAAGACTGG
AGATGCATCCTGCCACTCTGATGGTACGTTAGCTTGGAAGGACTGGAGGTTACTTTTGCT
CCCTCATCCATGGGTGGAATTTTCTGAATGTTTCTACCGGTTTGTGCCAATGTGAGATGG
GTGAATGGCAAGCTCTGCACGGTGGCACGTGGAATGCTGTGAAGTCTCCCTACAACAGCA
GATATGTTGATGTGAAACTTGCTCATAAGAAATATGTTGTCTTCAGCCTTTCCATTCAGG
AAGAGCTTCAGAAGTGGCGTTTAGCTTGCCTTGGTATTGGATTTGTTCTGCTATTCCTGT
CACCCATCGTTAGTATATGGGCACCTTTTTACTATAGCAGCTCTATGGCTCTTGGAATCC
TACTTGTGGTGCTGATTGTCCTTTTCGAGATATTGTTTTAGTCAAATACCTGTATATGAT
TCTCTTGATAAAATTTAATTACTAAAAAAAGGAAAAAAACAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_47445.2	1024	2e-85	823 - 1024	95	192 / 202	CUST_19020_PI390587928 CUST_28236_PI390587928	ABC09264 ABC26240
AK375959	1901	2e-160	786 - 1111	98	320 / 326	CUST_19020_PI390587928 CUST_17762_PI390587928	ABC09264 ABC26240
AK368745	3248	1e-176	2897 - 3247	99	346 / 351	CUST_35985_PI390587928 CUST_19020_PI390587928	ABC09264 ABC13546 ABC26240
MLOC_47445.3	1019	2e-85	818 - 1019	95	192 / 202	CUST_28236_PI390587928	ABC09264 ABC26240
MLOC_47445.1	996	2e-85	795 - 996	95	192 / 202	CUST_28236_PI390587928	ABC09264 ABC26240
AK358017	1420	7e-144	587 - 887	97	293 / 301	CUST_5636_PI390587928 CUST_5634_PI390587928	ABC09264 ABC26240 ABC46402
AK373999	1880	7e-139	463 - 763	96	290 / 301	CUST_5634_PI390587928 CUST_28581_PI390587928	ABC09264 ABC12547 ABC26240
AK375292	2079	7e-139	463 - 763	96	290 / 301	CUST_28581_PI390587928 CUST_5634_PI390587928	ABC09264 ABC12547 ABC26240 ABC47626
MLOC_48143.1	380	7e-139	104 - 380	99	274 / 277	None	ABC09264 ABC26240
MLOC_38387.1	1984	3e-137	332 - 632	96	289 / 301	CUST_33458_PI390587928 CUST_28580_PI390587928 CUST_5634_PI390587928	ABC09264 ABC12547 ABC26240 ABC47626
MLOC_47445.4	670	2e-95	1 - 190	100	190 / 190	None	ABC09264 ABC26240
MLOC_29855.1	247	2e-99	13 - 247	95	223 / 235	CUST_10664_PI390587928	ABC09264 ABC26240
MLOC_42944.1	237	1e-62	1 - 137	99	135 / 137	CUST_29816_PI390587928	ABC26240
MLOC_26962.1	278	2e-60	33 - 177	96	139 / 145	None	ABC09264 ABC26240