barSeed - Barley Seed Development Database

Probe CUST_35985_PI390587928

Source Contig U35_17142

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35985_PI390587928	Hv_44K_v2	CAGATATTTCATACTCTGGATTTTGATCGTGAATTTGTGATCAAACGGTAAACGCTATAC	1625	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.860	1.385	1.224	0.664	0.211	0.421
Raw	128.790	142.249	115.474	100.188	11.322	24.304

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368745	3248	2e-24	898 - 957	100	60 / 60	minus	ABC09264 ABC13546 ABC26240
MLOC	MLOC_79876.1	1022	2e-24	915 - 974	100	60 / 60	plus	ABC13546
MLOC	MLOC_79876.2	1830	6e-24	1 - 59	100	59 / 59	minus	ABC13546
JLOC1	JLOC1_53188.1	1916	8e-25	1703 - 1762	100	60 / 60	plus
Harvest21	ABC13546	1732	3e-25	48 - 107	100	60 / 60	minus	ABC13546
Harvest35	U35_17142	1732	3e-25	1626 - 1685	100	60 / 60	plus
Harvest35	U35_17140	645	1e-23	26 - 85	98	59 / 60	minus

Contig Sequence (1732 bp)

>U35_17142 1732 Hv_44K_v2
GGTCGATCCAGTCAATATGACTAAACTGAAATTTCCGTGCGAGACACACCGGAAAACCAG
GGACGGGCAGTAGCTAGTTACGGTGGGTAGCTAGCCATGGAGCAGCAGCACCGGCCGGAC
TCGGAGTCGGAGGCTCCGCTGCTAGCCGCCTCGAGCCCGATGGCGCCGCGTCTTCGTCGC
CGCGGCGCAACAGGTTCCCCTTCTTCTGCGCCGTGCTCGCCTCCATGACCTCCGTCCTCA
CGGGCTACAACGTGGCGGTGATGAGCGGGGCGCAGATCTTCATGGCGGAAGACCTCGGGG
TGAGCGACACGCAGATCGAGCTGCTCTCCGGTGCCATCAGCATCTTCTCGCTGGTCGGCG
CGCTGCTCGCCGGCTGGACCTCCGACCGCCTCGGTCGCCGCCTCACCATTGTGCTGACCA
ACGGCTTCTTCCTCGTTGGCTCGCTTATCATGACGCTCGCGGGCGGGTACACGGCGCTCA
TGGCGGGGCGGTNCGTCGCTGGAATNNNNNTNGTGGCCCCGTCGGAATCGCGCCCGTCTA
CGCTGCCGAGATCGCGCCGGCCTCCTCCCGCGGCCTTCTCAGCTCCCTTCCCGAGATTTT
TATCAACACCGGGGTGATGCTGAGCTACGTGTCAAACTTCGCGTTCTCGGCGTTGCCAGC
GCACCTGTCGTGGCGGCTGATGTTCGCGGTGGGGGTTGTGCCTACCGTGTTTCTGGCGGC
TGGCGTGCTCACCATGCCGGAGTCGCCGCGGTGGCTGGCGATGAAGGGCCGGCTGGACGA
GGCGAAAGCCGTGCTCGACAGGACGTCGGACACGCTCGCCGAGGCCGAGCAGCGTCTGCT
GGAGATCGAGGAGGTTGTCGTCCCCGGCGCCAGCAACGGTGCCGGCGGGACGTGGAATGA
GGTGACGACCAAGGCCGGCGTCAGGCGCGTGCTGGCCACAGTTCTGGCGCTGCAGTTCTT
CCAGCAGGCGTCGGGCATCGACTCGGTGGTACTCTACGGCCCGCGCGTGCTCGCCATGGC
CGGCGTCACGTCCAACAACCTCCTCCTGGGCCTCAACGTCCTCTTCGGCGTGGCCAAGGC
CGGCTCAATCCTGATCGCCATGGCGCTCGCCGACCGTGTCGGCCGGCGCCCTCTGCTCCT
GGTGAGCACCGGCGGCATGACGGCGTCGCTGCTCGTGCTGGGATCTGTGTTCGCTGCTTT
CGCCGGCGCCAAGGACGACGCGGCGGTGGCCGCCGTTGCTGTGGCGGCTGTGGTGGCGTT
CGTCTGTACCTTCTCCGTCGGGCTCGGGCCTCTGGCCTGGGTGTACAGCTCGGAGATCTT
ACCTCTGCGGCTGCGCGGACAGGGCGCCGGGCTCGGCACCGCCATGAACCGCGTCATGAG
CGGCATCGTCACCATGACCTTCATCTCGCTCTATGGGGCTATCACCATGGCCGGCACATT
TTACCTTTACGCCGCAGTCGCGGCTGCCTCGTTCGCCTTCATCTATACCTTCCTGCCGGA
GACTAGGGGCCGGAACCTCGAGGACATGGAGCAGCTCTTCCGGACAAAGTGATCAAAACA
CCAGCCCGTCCTCACATTGATATTTCGTACTCCTGATTAGCTACTTGTGATTGGAAATAG
GGCCACAGATATTTCATACTCTGGATTTTGATCGTGAATTTGTGATCAAACGGTAAACGC
TATACAACATTATTAAAACGATTCTTTCTTTTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g32940.1	488	6e-172	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi4g06410.1	483	2e-177
Arabidopsis v10	AT3G18830.1	539	2e-107	\| Symbols: ATPLT5, PMT5, ATPMT5 \| polyol/monosaccharide transporter 5 \| chr3:6489000-6491209 REVERSE LENGTH=539