barSeed - Barley Seed Development Database

Probe ABC19920

Source Contig ABC19920

barSeed

Links

Affymetrix Source Sequence (999 bp)

>ABC19920 999
GAGCACTTGCAAGGTCCAAGAAGGAACCACCTCCTAGCTCTGTTGCTGATGATGCTAGTC
ATGAAAGATTGGTAAAGGCGGCCCGCATGACTGAGATAGAGGATCTGCAAGCTCCACGAA
GTCTCCCATATGCACTACTTTGTATAAAGGATCCTAGAGAATATTTTGATTCTCAGCAAG
CAAATGCTCTGAGACCTTTAGGTAGTAACGATGGAAGAAAGGCCCGCAGCTGCAGCCTTA
GTACGGATGATGCATTCCGTCATTTAATGGATCAAATATCTTCCGTGAAAATGAACTGTC
CGGTTGTTCAGTCAGATGTTGCTCTAAAGGAAAACCTAACTACCTACATGGTATGGGCCT
AGGTTCTTAATGAATTGAATGAAGGAATTTCACGTTCACGGAGGCTTAATCTTAAGAATC
CCCAAGACAGTCTCCTTGGCCGTCTTCCTCACCGAACACGGGATGAACTTATGGATCATT
GGATGGCTATCCAGGAGTTGCTGCGCCATTTTTGGTCATCATACCCAATAACAACCACAG
TCCTTTGTAATAAGGTTCAACGGCTTAAGGAAGCAATGACACAGATATATCAGAAGTTAC
AGGATATAAAGGAATCTGCACAGCCTGATGTACGGCATGAAATATCTCAACTCGTAAAGC
CCATGACGCAGGCGCTGGATGCTGCATTCAACCATGAGCATGACCAGCAGCAGAAATCTT
CAAAGGCCGGGAGCAAGCCTAATGGTTTTTGAGCAGAGAACACCACCCATAAGGATTCAA
CCTGATTATTGCTAGAGCGTGTGAGGGCTACCACACCCACACCCGTGAGCTCTAGGCGGC
AATTGAAGAGGCACTTCTGGAGGATTTGATTTTGCCGTGTATTTTTATTCACACGTGGCA
CATAATAACATGCTTAGTTGCAAATTTTGCCCTGGACATGTCGTATCCCTCCTAGCTGTT
TCAAGATAGAATCATCATTTTGGATCTTCATTTTATTTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_21142.8	1633	0.0	553 - 1550	100	998 / 998	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.3	1567	0.0	487 - 1484	100	998 / 998	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.2	1814	0.0	716 - 1713	100	998 / 998	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.6	1574	0.0	746 - 1574	100	829 / 829	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.8	2941	0.0	1823 - 2778	92	891 / 973	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.5	1631	1e-172	566 - 894	100	329 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.1	1603	1e-172	538 - 866	100	329 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.4	1712	1e-172	665 - 993	100	329 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
AK248433.1	2474	1e-172	1485 - 1813	100	329 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.3	2710	0.0	1981 - 2705	95	697 / 731	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.10	1641	1e-172	722 - 1050	100	329 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_21142.9	1351	0.0	726 - 1200	100	475 / 475	CUST_24401_PI390587928	ABC19920
MLOC_21142.7	1363	1e-172	568 - 896	100	329 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
AK367597	3754	1e-98	2494 - 2689	100	196 / 196	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.7	2195	2e-135	1110 - 1416	95	292 / 307	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.9	2908	2e-135	1823 - 2129	95	292 / 307	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.6	2140	6e-146	1012 - 1340	95	313 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
AK374611	2307	6e-146	1430 - 1758	95	313 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.11	1921	6e-146	1106 - 1434	95	313 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.10	2502	6e-146	1720 - 2048	95	313 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.2	2386	6e-146	1690 - 2018	95	313 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.4	2492	6e-146	1796 - 2124	95	313 / 329	CUST_24401_PI390587928 CUST_15470_PI390587928 CUST_16044_PI390587928	ABC19920
MLOC_68305.5	2082	4e-162	1725 - 2082	96	342 / 358	CUST_24401_PI390587928	ABC19920
MLOC_68305.1	1706	6e-146	1268 - 1596	95	313 / 329	CUST_24401_PI390587928	ABC19920